NMR Restraints Grid |
Result table
image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
629937 | 5v0y | 30259 | cing | 4-filtered-FRED | Wattos | check | violation | distance |
data_5v0y save_distance_constraint_statistics_1 _Distance_constraint_stats_list.Sf_category distance_constraint_statistics _Distance_constraint_stats_list.Constraint_list_ID 1 _Distance_constraint_stats_list.Constraint_count 6 _Distance_constraint_stats_list.Viol_count 89 _Distance_constraint_stats_list.Viol_total 157.206 _Distance_constraint_stats_list.Viol_max 0.109 _Distance_constraint_stats_list.Viol_rms 0.0460 _Distance_constraint_stats_list.Viol_average_all_restraints 0.0655 _Distance_constraint_stats_list.Viol_average_violations_only 0.0883 _Distance_constraint_stats_list.Cutoff_violation_report 0.500 _Distance_constraint_stats_list.Details ; Description of the tags in this list: * 1 * Administrative tag * 2 * Administrative tag * 3 * Administrative tag * 4 * ID of the restraint list. * 5 * Number of restraints in list. * 6 * Number of violated restraints (each model violation is used). * 7 * Sum of violations in Angstrom. * 8 * Maximum violation of a restraint without averaging in any way. * 9 * Rms of violations over all restraints. * 10 * Average violation over all restraints. * 11 * Average violation over violated restraints. This violation is averaged over only those models in which the restraint is violated. These definitions are from: Doreleijers, et al., J. Mol. Biol. 281, 149-164 (1998). * 12 * Threshold for reporting violations (in Angstrom) in the last columns of the next table. * 13 * This tag Description of the tags in the per residue table below: * 1 * Chain identifier (can be absent if none defined) * 2 * Residue number * 3 * Residue name * 4 * Maximum violation in ensemble of models (without any averaging) * 5 * Model number with the maximum violation * 6 * Number of models with a violation above cutoff * 7 * List of models (1 character per model) with a violation above cutoff. An '*' marks a violation above the cutoff. A '+' indicates the largest violation above the cutoff and a '-' marks the smallest violation over cutoff. For models 5, 15, 25,... a ' ' is replaced by a '.'. For models 10, 20, 30,... a ' ' is replaced by a digit starting at 1. * 8 * Administrative tag * 9 * Administrative tag Description of the tags in the per restraint table below: * 1 * Restraint ID within restraint list. First node, FIRST member, first atom's: * 2 * Chain identifier (can be absent if none defined) * 3 * Residue number * 4 * Residue name * 5 * Name of (pseudo-)atom First node, SECOND member, first atom's: * 6 * Chain identifier (can be absent if none defined) * 7 * Residue number * 8 * Residue name * 9 * Name of (pseudo-)atom FIRST node's: * 10 * Target distance value (Angstrom) * 11 * Lower bound distance (Angstrom) * 12 * Upper bound distance (Angstrom) * 13 * Average distance in ensemble of models * 14 * Minimum distance in ensemble of models * 15 * Maximum distance in ensemble of models * 16 * Maximum violation (without any averaging) * 17 * Model number with the maximum violation * 18 * Number of models with a violation above cutoff * 19 * List of models with a violation above cutoff. See description above. * 20 * Administrative tag * 21 * Administrative tag ; loop_ _Distance_constraint_stats_per_res.Atom_entity_assembly_ID _Distance_constraint_stats_per_res.Atom_comp_index_ID _Distance_constraint_stats_per_res.Atom_comp_ID _Distance_constraint_stats_per_res.Total_violation _Distance_constraint_stats_per_res.Max_violation _Distance_constraint_stats_per_res.Max_violation_model_number _Distance_constraint_stats_per_res.Over_cutoff_viol_count _Distance_constraint_stats_per_res.Over_cutoff_viol_per_model 1 3 CYS 3.693 0.101 13 0 "[ . 1 . 2]" 1 7 CYS 4.167 0.109 17 0 "[ . 1 . 2]" 1 16 CYS 4.167 0.109 17 0 "[ . 1 . 2]" 1 20 CYS 3.693 0.101 13 0 "[ . 1 . 2]" stop_ loop_ _Distance_constraint_stats.Restraint_ID _Distance_constraint_stats.Atom_1_entity_assembly_ID _Distance_constraint_stats.Atom_1_comp_index_ID _Distance_constraint_stats.Atom_1_comp_ID _Distance_constraint_stats.Atom_1_ID _Distance_constraint_stats.Atom_2_entity_assembly_ID _Distance_constraint_stats.Atom_2_comp_index_ID _Distance_constraint_stats.Atom_2_comp_ID _Distance_constraint_stats.Atom_2_ID _Distance_constraint_stats.Node_1_distance_val _Distance_constraint_stats.Node_1_distance_lower_bound_val _Distance_constraint_stats.Node_1_distance_upper_bound_val _Distance_constraint_stats.Distance_average _Distance_constraint_stats.Distance_minimum _Distance_constraint_stats.Distance_maximum _Distance_constraint_stats.Max_violation _Distance_constraint_stats.Max_violation_model_number _Distance_constraint_stats.Over_cutoff_violation_count _Distance_constraint_stats.Over_cutoff_viol_per_model _Distance_constraint_stats.Distance_constraint_stats_ID 1 1 3 CYS SG 1 20 CYS SG . . 2.000 2.001 1.981 2.042 0.042 18 0 "[ . 1 . 2]" 1 2 1 3 CYS SG 1 20 CYS CB . . 3.000 3.087 3.039 3.100 0.100 15 0 "[ . 1 . 2]" 1 3 1 3 CYS CB 1 20 CYS SG . . 3.000 3.091 3.038 3.101 0.101 13 0 "[ . 1 . 2]" 1 4 1 7 CYS SG 1 16 CYS SG . . 2.000 1.979 1.978 1.980 . 0 0 "[ . 1 . 2]" 1 5 1 7 CYS SG 1 16 CYS CB . . 3.000 3.101 3.098 3.104 0.104 15 0 "[ . 1 . 2]" 1 6 1 7 CYS CB 1 16 CYS SG . . 3.000 3.107 3.105 3.109 0.109 17 0 "[ . 1 . 2]" 1 stop_ save_ save_distance_constraint_statistics_2 _Distance_constraint_stats_list.Sf_category distance_constraint_statistics _Distance_constraint_stats_list.Constraint_list_ID 2 _Distance_constraint_stats_list.Constraint_count 16 _Distance_constraint_stats_list.Viol_count 320 _Distance_constraint_stats_list.Viol_total 3052.884 _Distance_constraint_stats_list.Viol_max 1.180 _Distance_constraint_stats_list.Viol_rms 0.3283 _Distance_constraint_stats_list.Viol_average_all_restraints 0.4770 _Distance_constraint_stats_list.Viol_average_violations_only 0.4770 _Distance_constraint_stats_list.Cutoff_violation_report 0.500 _Distance_constraint_stats_list.Details . loop_ _Distance_constraint_stats_per_res.Atom_entity_assembly_ID _Distance_constraint_stats_per_res.Atom_comp_index_ID _Distance_constraint_stats_per_res.Atom_comp_ID _Distance_constraint_stats_per_res.Total_violation _Distance_constraint_stats_per_res.Max_violation _Distance_constraint_stats_per_res.Max_violation_model_number _Distance_constraint_stats_per_res.Over_cutoff_viol_count _Distance_constraint_stats_per_res.Over_cutoff_viol_per_model 1 4 TRP 18.259 0.461 10 0 "[ . 1 . 2]" 1 6 VAL 28.277 0.552 11 12 "[ ***.** -*+** * *]" 1 8 VAL 77.032 1.180 13 20 [************+*****-*] 1 10 ARG 29.076 0.746 12 20 [***********+*******-] 1 13 VAL 29.076 0.746 12 20 [***********+*******-] 1 15 VAL 77.032 1.180 13 20 [************+*****-*] 1 17 TYR 28.277 0.552 11 12 "[ ***.** -*+** * *]" 1 19 ARG 18.259 0.461 10 0 "[ . 1 . 2]" stop_ loop_ _Distance_constraint_stats.Restraint_ID _Distance_constraint_stats.Atom_1_entity_assembly_ID _Distance_constraint_stats.Atom_1_comp_index_ID _Distance_constraint_stats.Atom_1_comp_ID _Distance_constraint_stats.Atom_1_ID _Distance_constraint_stats.Atom_2_entity_assembly_ID _Distance_constraint_stats.Atom_2_comp_index_ID _Distance_constraint_stats.Atom_2_comp_ID _Distance_constraint_stats.Atom_2_ID _Distance_constraint_stats.Node_1_distance_val _Distance_constraint_stats.Node_1_distance_lower_bound_val _Distance_constraint_stats.Node_1_distance_upper_bound_val _Distance_constraint_stats.Distance_average _Distance_constraint_stats.Distance_minimum _Distance_constraint_stats.Distance_maximum _Distance_constraint_stats.Max_violation _Distance_constraint_stats.Max_violation_model_number _Distance_constraint_stats.Over_cutoff_violation_count _Distance_constraint_stats.Over_cutoff_viol_per_model _Distance_constraint_stats.Distance_constraint_stats_ID 1 1 4 TRP H 1 19 ARG O . . 1.700 2.128 2.076 2.161 0.461 10 0 "[ . 1 . 2]" 2 2 1 4 TRP N 1 19 ARG O . . 2.700 2.995 2.924 3.018 0.318 16 0 "[ . 1 . 2]" 2 3 1 4 TRP O 1 19 ARG H . . 1.700 1.834 1.803 1.865 0.165 1 0 "[ . 1 . 2]" 2 4 1 4 TRP O 1 19 ARG N . . 2.700 2.756 2.748 2.782 0.082 19 0 "[ . 1 . 2]" 2 5 1 6 VAL O 1 17 TYR H . . 1.700 2.025 2.009 2.041 0.341 3 0 "[ . 1 . 2]" 2 6 1 6 VAL O 1 17 TYR N . . 2.700 2.919 2.904 2.936 0.236 3 0 "[ . 1 . 2]" 2 7 1 6 VAL H 1 17 TYR O . . 1.700 2.209 2.159 2.252 0.552 11 12 "[ ***.** -*+** * *]" 2 8 1 6 VAL N 1 17 TYR O . . 2.700 3.060 3.026 3.084 0.384 11 0 "[ . 1 . 2]" 2 9 1 8 VAL H 1 15 VAL O . . 1.700 2.634 2.614 2.650 0.950 11 20 [**********+*******-*] 2 10 1 8 VAL N 1 15 VAL O . . 2.700 3.529 3.511 3.545 0.845 17 20 [****************+*-*] 2 11 1 8 VAL O 1 15 VAL H . . 1.700 2.848 2.797 2.880 1.180 13 20 [****-*******+*******] 2 12 1 8 VAL O 1 15 VAL N . . 2.700 3.641 3.607 3.663 0.963 13 20 [****-*******+*******] 2 13 1 10 ARG O 1 13 VAL H . . 1.700 2.425 2.328 2.446 0.746 12 20 [***********+*******-] 2 14 1 10 ARG O 1 13 VAL N . . 2.700 3.128 3.029 3.146 0.446 12 0 "[ . 1 . 2]" 2 15 1 10 ARG H 1 13 VAL O . . 1.700 1.885 1.822 1.908 0.208 12 0 "[ . 1 . 2]" 2 16 1 10 ARG N 1 13 VAL O . . 2.700 2.816 2.776 2.830 0.130 13 0 "[ . 1 . 2]" 2 stop_ save_
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