NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype item_count
611650 2nar 25944 cing 2-parsed STAR distance NOE simple 22


data_2nar_MR_file_constraints


save_Conversion_project
    _Study_list.Sf_category  study_list 
    _Study_list.Entry_ID     parsed_2nar 
    _Study_list.ID           1 

    loop_
        _Study.ID 
        _Study.Name 
        _Study.Type 
        _Study.Details 
        _Study.Entry_ID 
        _Study.Study_list_ID 

        1   "Conversion project"    NMR   .   parsed_2nar   1   
    stop_

save_


save_entry_information
    _Entry.Sf_category                  entry_information 
    _Entry.ID                           parsed_2nar 
    _Entry.Title                       "Original constraint list(s)" 
    _Entry.Version_type                 original 
    _Entry.Submission_date              . 
    _Entry.Accession_date               . 
    _Entry.Last_release_date            . 
    _Entry.Original_release_date        . 
    _Entry.Origination                  . 
    _Entry.NMR_STAR_version             3.1 
    _Entry.Original_NMR_STAR_version    . 
    _Entry.Experimental_method          NMR 
    _Entry.Experimental_method_subtype  . 

    loop_
        _Related_entries.Database_name 
        _Related_entries.Database_accession_code 
        _Related_entries.Relationship 
        _Related_entries.Entry_ID 

        PDB   2nar   "Master copy"    parsed_2nar   
    stop_

save_


save_global_Org_file_characteristics
    _Constraint_stat_list.Sf_category  constraint_statistics 
    _Constraint_stat_list.Entry_ID     parsed_2nar 
    _Constraint_stat_list.ID           1 

    loop_
        _Constraint_file.ID 
        _Constraint_file.Constraint_filename 
        _Constraint_file.Software_ID 
        _Constraint_file.Software_label 
        _Constraint_file.Software_name 
        _Constraint_file.Block_ID 
        _Constraint_file.Constraint_type 
        _Constraint_file.Constraint_subtype 
        _Constraint_file.Constraint_subsubtype 
        _Constraint_file.Constraint_number 
        _Constraint_file.Entry_ID 
        _Constraint_file.Constraint_stat_list_ID 

        1   2nar.mr   .   .   "MR format"    1    comment                  "Not applicable"    "Not applicable"      0   parsed_2nar   1   
        1   2nar.mr   .   .    DYANA/DIANA   2   "dihedral angle"          "Not applicable"    "Not applicable"    122   parsed_2nar   1   
        1   2nar.mr   .   .    XEASY         3    peak                     "Not applicable"    "Not applicable"      0   parsed_2nar   1   
        1   2nar.mr   .   .    XEASY         4    peak                     "Not applicable"    "Not applicable"      0   parsed_2nar   1   
        1   2nar.mr   .   .    XEASY         5    peak                     "Not applicable"    "Not applicable"      0   parsed_2nar   1   
        1   2nar.mr   .   .    XEASY         6    peak                     "Not applicable"    "Not applicable"      0   parsed_2nar   1   
        1   2nar.mr   .   .    DYANA/DIANA   7    distance                  NOE                 simple              22   parsed_2nar   1   
        1   2nar.mr   .   .   "MR format"    8   "nomenclature mapping"    "Not applicable"    "Not applicable"      0   parsed_2nar   1   
    stop_

save_


save_DYANA/DIANA_distance_constraints_7
    _Distance_constraint_list.Sf_category         distance_constraints 
    _Distance_constraint_list.Entry_ID            parsed_2nar 
    _Distance_constraint_list.ID                  1 
    _Distance_constraint_list.Constraint_type     NOE 
    _Distance_constraint_list.Constraint_file_ID  1 
    _Distance_constraint_list.Block_ID            7 
    _Distance_constraint_list.Details            "Generated by Wattos" 

    loop_
        _Dist_constraint_tree.Constraint_ID 
        _Dist_constraint_tree.Node_ID 
        _Dist_constraint_tree.Down_node_ID 
        _Dist_constraint_tree.Right_node_ID 
        _Dist_constraint_tree.Logic_operation 
        _Dist_constraint_tree.Entry_ID 
        _Dist_constraint_tree.Distance_constraint_list_ID 

         1   1   .   .   .   parsed_2nar   1   
         2   1   .   .   .   parsed_2nar   1   
         3   1   .   .   .   parsed_2nar   1   
         4   1   .   .   .   parsed_2nar   1   
         5   1   .   .   .   parsed_2nar   1   
         6   1   .   .   .   parsed_2nar   1   
         7   1   .   .   .   parsed_2nar   1   
         8   1   .   .   .   parsed_2nar   1   
         9   1   .   .   .   parsed_2nar   1   
        10   1   .   .   .   parsed_2nar   1   
        11   1   .   .   .   parsed_2nar   1   
        12   1   .   .   .   parsed_2nar   1   
        13   1   .   .   .   parsed_2nar   1   
        14   1   .   .   .   parsed_2nar   1   
        15   1   .   .   .   parsed_2nar   1   
        16   1   .   .   .   parsed_2nar   1   
        17   1   .   .   .   parsed_2nar   1   
        18   1   .   .   .   parsed_2nar   1   
        19   1   .   .   .   parsed_2nar   1   
        20   1   .   .   .   parsed_2nar   1   
        21   1   .   .   .   parsed_2nar   1   
        22   1   .   .   .   parsed_2nar   1   
    stop_


    loop_
        _Dist_constraint.Tree_node_member_constraint_ID 
        _Dist_constraint.Tree_node_member_node_ID 
        _Dist_constraint.Constraint_tree_node_member_ID 
        _Dist_constraint.Assembly_atom_ID 
        _Dist_constraint.Entity_assembly_ID 
        _Dist_constraint.Entity_ID 
        _Dist_constraint.Comp_index_ID 
        _Dist_constraint.Seq_ID 
        _Dist_constraint.Comp_ID 
        _Dist_constraint.Atom_ID 
        _Dist_constraint.Resonance_ID 
        _Dist_constraint.Auth_asym_ID 
        _Dist_constraint.Auth_seq_ID 
        _Dist_constraint.Auth_comp_ID 
        _Dist_constraint.Auth_atom_ID 
        _Dist_constraint.Entry_ID 
        _Dist_constraint.Distance_constraint_list_ID 

         1   1   1   .   .   .   .   .   .   .   .   .   13   PHE   HA    parsed_2nar   1   
         1   1   2   .   .   .   .   .   .   .   .   .   45   TRP   HE1   parsed_2nar   1   
         2   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QB    parsed_2nar   1   
         2   1   2   .   .   .   .   .   .   .   .   .   45   TRP   HE1   parsed_2nar   1   
         3   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
         3   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HA    parsed_2nar   1   
         4   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QD    parsed_2nar   1   
         4   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HB3   parsed_2nar   1   
         5   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QB    parsed_2nar   1   
         5   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HZ3   parsed_2nar   1   
         6   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
         6   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HB3   parsed_2nar   1   
         7   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
         7   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HB2   parsed_2nar   1   
         8   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QB    parsed_2nar   1   
         8   1   2   .   .   .   .   .   .   .   .   .   45   TRP   HZ2   parsed_2nar   1   
         9   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QB    parsed_2nar   1   
         9   1   2   .   .   .   .   .   .   .   .   .   45   TRP   HH2   parsed_2nar   1   
        10   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
        10   1   2   .   .   .   .   .   .   .   .   .   45   TRP   HE1   parsed_2nar   1   
        11   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QD    parsed_2nar   1   
        11   1   2   .   .   .   .   .   .   .   .   .   45   TRP   H     parsed_2nar   1   
        12   1   1   .   .   .   .   .   .   .   .   .   13   PHE   H     parsed_2nar   1   
        12   1   2   .   .   .   .   .   .   .   .   .   45   TRP   HE1   parsed_2nar   1   
        13   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QD    parsed_2nar   1   
        13   1   2   .   .   .   .   .   .   .   .   .   45   TRP   HE1   parsed_2nar   1   
        14   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
        14   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HE1   parsed_2nar   1   
        15   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
        15   1   2   .   .   .   .   .   .   .   .   .   45   TRP   H     parsed_2nar   1   
        16   1   1   .   .   .   .   .   .   .   .   .   13   PHE   HZ    parsed_2nar   1   
        16   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HD1   parsed_2nar   1   
        17   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
        17   1   2   .   .   .   .   .   .   .   .   .   44   TRP   H     parsed_2nar   1   
        18   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
        18   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HE3   parsed_2nar   1   
        19   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QE    parsed_2nar   1   
        19   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HZ2   parsed_2nar   1   
        20   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QD    parsed_2nar   1   
        20   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HZ3   parsed_2nar   1   
        21   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QB    parsed_2nar   1   
        21   1   2   .   .   .   .   .   .   .   .   .   44   TRP   HE3   parsed_2nar   1   
        22   1   1   .   .   .   .   .   .   .   .   .   13   PHE   QB    parsed_2nar   1   
        22   1   2   .   .   .   .   .   .   .   .   .   45   TRP   HD1   parsed_2nar   1   
    stop_


    loop_
        _Dist_constraint_value.Constraint_ID 
        _Dist_constraint_value.Tree_node_ID 
        _Dist_constraint_value.Source_experiment_ID 
        _Dist_constraint_value.Spectral_peak_ID 
        _Dist_constraint_value.Intensity_val 
        _Dist_constraint_value.Intensity_lower_val_err 
        _Dist_constraint_value.Intensity_upper_val_err 
        _Dist_constraint_value.Distance_val 
        _Dist_constraint_value.Distance_lower_bound_val 
        _Dist_constraint_value.Distance_upper_bound_val 
        _Dist_constraint_value.Entry_ID 
        _Dist_constraint_value.Distance_constraint_list_ID 

         1   1   .   .   .   .   .   .   .   4.54   parsed_2nar   1   
         2   1   .   .   .   .   .   .   .   4.18   parsed_2nar   1   
         3   1   .   .   .   .   .   .   .   5.09   parsed_2nar   1   
         4   1   .   .   .   .   .   .   .   4.53   parsed_2nar   1   
         5   1   .   .   .   .   .   .   .   4.78   parsed_2nar   1   
         6   1   .   .   .   .   .   .   .   3.75   parsed_2nar   1   
         7   1   .   .   .   .   .   .   .   3.30   parsed_2nar   1   
         8   1   .   .   .   .   .   .   .   5.02   parsed_2nar   1   
         9   1   .   .   .   .   .   .   .   4.88   parsed_2nar   1   
        10   1   .   .   .   .   .   .   .   5.98   parsed_2nar   1   
        11   1   .   .   .   .   .   .   .   5.28   parsed_2nar   1   
        12   1   .   .   .   .   .   .   .   5.32   parsed_2nar   1   
        13   1   .   .   .   .   .   .   .   5.00   parsed_2nar   1   
        14   1   .   .   .   .   .   .   .   4.64   parsed_2nar   1   
        15   1   .   .   .   .   .   .   .   5.21   parsed_2nar   1   
        16   1   .   .   .   .   .   .   .   5.61   parsed_2nar   1   
        17   1   .   .   .   .   .   .   .   4.94   parsed_2nar   1   
        18   1   .   .   .   .   .   .   .   4.63   parsed_2nar   1   
        19   1   .   .   .   .   .   .   .   5.27   parsed_2nar   1   
        20   1   .   .   .   .   .   .   .   4.23   parsed_2nar   1   
        21   1   .   .   .   .   .   .   .   3.98   parsed_2nar   1   
        22   1   .   .   .   .   .   .   .   4.06   parsed_2nar   1   
    stop_


    loop_
        _Dist_constraint_comment_org.ID 
        _Dist_constraint_comment_org.Comment_text 
        _Dist_constraint_comment_org.Comment_begin_line 
        _Dist_constraint_comment_org.Comment_begin_column 
        _Dist_constraint_comment_org.Comment_end_line 
        _Dist_constraint_comment_org.Comment_end_column 
        _Dist_constraint_comment_org.Entry_ID 
        _Dist_constraint_comment_org.Distance_constraint_list_ID 

         1   "additional upper distance limit, set fixed by re-analyzing the 2D-NOESY manually"          1    1    1   81   parsed_2nar   1   
         2   "peak   452 #SUP  0.88  #QF  0.88"                                                          2   49    2   81   parsed_2nar   1   
         3   "peak   453 #SUP  0.90  #QF  0.90"                                                          3   49    3   81   parsed_2nar   1   
         4   "peak   948 #SUP  0.82  #QF  0.82 #4.6"                                                     4   49    4   86   parsed_2nar   1   
         5   "peak  1000 #SUP  1.00"                                                                     5   49    5   70   parsed_2nar   1   
         6   "peak  1009 #SUP  0.67  #QF  0.67 #5.1"                                                     6   49    6   86   parsed_2nar   1   
         7   "peak  1013 #SUP  0.94  #QF  0.94 #3.5"                                                     7   49    7   86   parsed_2nar   1   
         8   "peak  1014 #SUP  0.79  #QF  0.79 #3.0"                                                     8   49    8   86   parsed_2nar   1   
         9   "peak  1015 #SUP  0.88  #QF  0.82"                                                          9   49    9   81   parsed_2nar   1   
        10   "peak  1056 #SUP  0.28  #QF  0.28 #4.3"                                                    10   49   10   86   parsed_2nar   1   
        11   "peak  1279 #SUP  0.91  #QF  0.91 #6.0"                                                    11   49   11   86   parsed_2nar   1   
        12   "peak  1280 #SUP  0.87  #QF  0.87"                                                         12   49   12   81   parsed_2nar   1   
        13   "peak  1299 #SUP  0.99  #QF  0.99 #6.2"                                                    13   49   13   86   parsed_2nar   1   
        14   "peak  1300 #SUP  0.98  #QF  0.46 #6.0"                                                    14   49   14   86   parsed_2nar   1   
        15   "peak  1303 #SUP  0.93  #QF  0.93 #5.0"                                                    15   49   15   86   parsed_2nar   1   
        16   "peak  1305 #SUP  0.97  #QF  0.97 #5.0"                                                    16   49   16   86   parsed_2nar   1   
        17   "peak  1402 #SUP  0.66  #QF  0.56"                                                         17   49   17   81   parsed_2nar   1   
        18   "peak  1415 #SUP  1.00"                                                                    18   49   18   74   parsed_2nar   1   
        19   "peak  1421 #SUP  0.99  #QF  0.26"                                                         19   49   19   81   parsed_2nar   1   
        20   "peak  1422 #SUP  1.00    #5.8"                                                            20   49   20   78   parsed_2nar   1   
        21   "13 PHE  QE     44 TRP  HZ3     5.58            #peak  1437 #SUP  0.75  #QF  0.75 #5.8"    21    2   21   87   parsed_2nar   1   
        22   "peak  1452 #SUP  0.33  #QF  0.33"                                                         22   49   22   82   parsed_2nar   1   
        23   "peak  2109 #SUP  0.93  #QF  0.93 #3.0"                                                    23   49   23   86   parsed_2nar   1   
        24   "peak  2111 #SUP  0.99  #QF  0.91 #3.5"                                                    24   49   24   86   parsed_2nar   1   
    stop_

save_





Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Wednesday, May 29, 2024 8:41:20 AM GMT (wattos1)