NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype
587882 2mwr 25352 cing 4-filtered-FRED Wattos check stereo assignment distance


data_2mwr


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        49
    _Stereo_assign_list.Swap_count           2
    _Stereo_assign_list.Swap_percentage      4.1
    _Stereo_assign_list.Deassign_count       2
    _Stereo_assign_list.Deassign_percentage  4.1
    _Stereo_assign_list.Model_count          20
    _Stereo_assign_list.Total_e_low_states   9.734
    _Stereo_assign_list.Total_e_high_states  144.820
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1  1 ILE QG 22 no  100.0 100.0  0.729  0.729 0.000  9  0 no  0.000 0 0 
       1  2 TYR QB 19 no  100.0   0.0  0.000  0.000 0.000 10  0 no  0.000 0 0 
       1  2 TYR QD 26 no   95.0  90.8  7.673  8.455 0.782  8  0 yes 3.315 3 4 
       1  2 TYR QE 33 no   95.0  94.6  1.657  1.752 0.095  6  1 yes 1.226 1 1 
       1  3 TRP QB 20 no  100.0 100.0  1.385  1.385 0.000 10  2 no  0.000 0 0 
       1  4 ILE QG  8 no  100.0 100.0  2.498  2.498 0.000 19  2 no  0.002 0 0 
       1  6 ASP QB 49 no  100.0   0.0  0.000  0.000 0.000  2  0 no  0.000 0 0 
       1  7 GLN QB 29 no  100.0 100.0  0.923  0.923 0.000  7  1 no  0.000 0 0 
       1  7 GLN QE 32 no  100.0   0.0  0.000  0.000 0.000  6  0 no  0.006 0 0 
       1  7 GLN QG 18 no  100.0   0.0  0.000  0.000 0.000 10  0 no  0.011 0 0 
       1  8 PHE QB 16 no  100.0   0.0  0.000  0.000 0.000 14  6 no  0.003 0 0 
       1  8 PHE QD 23 no  100.0 100.0 24.600 24.600 0.000  9  1 no  0.021 0 0 
       1  8 PHE QE 31 no  100.0 100.0 21.275 21.275 0.000  6  0 no  0.015 0 0 
       1  9 GLY QA 36 no  100.0 100.0  0.542  0.542 0.000  5  2 no  0.000 0 0 
       1 10 ILE QG 28 no  100.0   0.0  0.000  0.000 0.000  8  4 no  0.003 0 0 
       1 11 HIS QB 48 no  100.0   0.0  0.000  0.000 0.000  2  0 no  0.000 0 0 
       1 12 LEU QB 30 no    0.0   0.0  0.000  0.003 0.003  6  0 no  0.189 0 0 
       1 12 LEU QD 21 no  100.0  99.9  0.774  0.775 0.001  9  0 no  0.096 0 0 
       1 18 ARG QB 39 no  100.0   0.0  0.000  0.000 0.000  4  0 no  0.000 0 0 
       1 18 ARG QD 27 no  100.0   0.0  0.000  0.000 0.000  8  4 no  0.000 0 0 
       1 18 ARG QG 38 no  100.0   0.0  0.000  0.000 0.000  4  0 no  0.000 0 0 
       1 19 LYS QB 47 no  100.0   0.0  0.000  0.000 0.000  2  0 no  0.003 0 0 
       1 19 LYS QE 46 no  100.0   0.0  0.000  0.000 0.000  2  0 no  0.028 0 0 
       1 19 LYS QG 45 no  100.0   0.0  0.000  0.000 0.000  2  0 no  0.000 0 0 
       1 20 LEU QB 41 no  100.0   0.0  0.000  0.000 0.000  4  2 no  0.000 0 0 
       1 20 LEU QD  5 no   95.0  62.7  8.835 14.083 5.247 24  6 no  0.000 0 0 
       1 21 LEU QB 34 no  100.0   0.0  0.000  0.000 0.000  6  2 no  0.001 0 0 
       1 21 LEU QD 14 no  100.0 100.0  4.830  4.830 0.000 15  7 no  0.000 0 0 
       1 22 ASP QB 25 no  100.0   0.0  0.000  0.000 0.000  8  0 no  0.000 0 0 
       1 24 VAL QG  1 no   50.0   0.6  0.020  3.238 3.217 36  3 no  0.000 0 0 
       1 26 SER QB 44 no  100.0   0.0  0.000  0.000 0.000  2  0 no  0.000 0 0 
       1 30 LEU QB 37 no  100.0   0.0  0.000  0.000 0.000  4  0 no  0.000 0 0 
       1 30 LEU QD  6 no   95.0 100.0  0.286  0.286 0.000 22  1 no  0.000 0 0 
       1 31 GLY QA 42 no  100.0   0.0  0.000  0.000 0.000  4  4 no  0.023 0 0 
       1 34 PHE QB  2 no  100.0 100.0  1.636  1.636 0.000 28 11 no  0.023 0 0 
       1 34 PHE QD  7 yes 100.0 100.0 19.726 19.726 0.000 20  9 no  0.018 0 0 
       1 34 PHE QE 40 yes 100.0 100.0  8.136  8.136 0.000  4  2 no  0.007 0 0 
       1 37 ILE QG 11 no  100.0 100.0  0.477  0.477 0.000 16  6 no  0.007 0 0 
       1 38 LEU QB 10 no  100.0  99.9  7.949  7.955 0.006 17  9 no  0.120 0 0 
       1 38 LEU QD  4 no  100.0  81.7  1.698  2.078 0.380 27 11 no  0.000 0 0 
       1 40 VAL QG  3 no  100.0 100.0  7.214  7.214 0.000 27  0 no  0.000 0 0 
       1 42 LEU QB 35 no  100.0 100.0  0.849  0.849 0.000  5  2 no  0.000 0 0 
       1 42 LEU QD  9 no  100.0 100.0  6.669  6.669 0.000 17  4 no  0.000 0 0 
       1 43 PRO QB 17 no  100.0 100.0  0.406  0.406 0.000 12  0 no  0.003 0 0 
       1 43 PRO QD 13 no  100.0 100.0  0.462  0.462 0.000 15  5 no  0.002 0 0 
       1 43 PRO QG 12 no  100.0  99.9  2.068  2.070 0.002 15  1 no  0.090 0 0 
       1 45 TRP QB 24 no  100.0 100.0  0.816  0.816 0.000  8  0 no  0.000 0 0 
       1 47 LEU QB 43 no  100.0   0.0  0.000  0.000 0.000  2  0 no  0.000 0 0 
       1 47 LEU QD 15 no  100.0 100.0  0.951  0.951 0.000 14  0 no  0.000 0 0 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Monday, May 20, 2024 6:11:20 AM GMT (wattos1)