NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
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578105 |
2moq   |
19056 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2moq
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 163
_NOE_completeness_stats.Total_atom_count 2414
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 838
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 22.5
_NOE_completeness_stats.Constraint_unexpanded_count 886
_NOE_completeness_stats.Constraint_count 886
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1396
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 92
_NOE_completeness_stats.Constraint_intraresidue_count 101
_NOE_completeness_stats.Constraint_surplus_count 12
_NOE_completeness_stats.Constraint_observed_count 681
_NOE_completeness_stats.Constraint_expected_count 1386
_NOE_completeness_stats.Constraint_matched_count 312
_NOE_completeness_stats.Constraint_unmatched_count 369
_NOE_completeness_stats.Constraint_exp_nonobs_count 1074
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 305 547 155 28.3 1.0 .
medium-range 97 179 27 15.1 -0.8 .
long-range 279 660 130 19.7 -0.2 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 0 0 0 0 0 0 0 0 0 0 . 0 . .
shell 2.00 2.50 139 29 0 0 1 5 6 10 4 3 . 0 20.9 20.9
shell 2.50 3.00 188 68 0 0 1 8 16 19 14 10 . 0 36.2 29.7
shell 3.00 3.50 371 88 0 0 1 8 22 19 24 14 . 0 23.7 26.5
shell 3.50 4.00 688 127 0 0 0 4 29 29 31 34 . 0 18.5 22.5
shell 4.00 4.50 1169 151 0 0 0 0 13 28 54 56 . 0 12.9 18.1
shell 4.50 5.00 1736 117 0 0 0 1 2 13 29 72 . 0 6.7 13.5
shell 5.00 5.50 2246 87 0 0 0 0 0 10 27 49 . 1 3.9 10.2
shell 5.50 6.00 2551 12 0 0 0 0 0 0 5 6 . 1 0.5 7.5
shell 6.00 6.50 3108 2 0 0 0 0 0 0 1 1 . 0 0.1 5.6
shell 6.50 7.00 3194 0 0 0 0 0 0 0 0 0 . 0 0.0 4.4
shell 7.00 7.50 3496 0 0 0 0 0 0 0 0 0 . 0 0.0 3.6
shell 7.50 8.00 3865 0 0 0 0 0 0 0 0 0 . 0 0.0 3.0
shell 8.00 8.50 4233 0 0 0 0 0 0 0 0 0 . 0 0.0 2.5
shell 8.50 9.00 4542 0 0 0 0 0 0 0 0 0 . 0 0.0 2.2
sums . . 31526 681 0 0 3 26 88 128 189 245 . 2 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 16 LEU 7 0 6 0 0.0 -1.7 >sigma
1 17 ASN 6 5 12 1 8.3 -1.0 >sigma
1 18 GLN 7 6 12 2 16.7 -0.4 .
1 19 GLU 5 3 16 1 6.3 -1.2 >sigma
1 20 LEU 7 15 33 8 24.2 0.1 .
1 21 ARG 7 10 24 6 25.0 0.2 .
1 22 GLU 5 10 18 5 27.8 0.4 .
1 23 ALA 3 19 24 13 54.2 2.4 >sigma
1 24 ILE 6 21 35 9 25.7 0.2 .
1 25 LYS 7 13 12 5 41.7 1.4 >sigma
1 26 ASN 6 12 15 6 40.0 1.3 >sigma
1 27 PRO 5 2 13 1 7.7 -1.1 >sigma
1 28 ALA 3 8 13 6 46.2 1.8 >sigma
1 29 ILE 6 11 26 5 19.2 -0.2 .
1 30 LYS 7 9 26 4 15.4 -0.5 .
1 31 ASP 4 7 9 6 66.7 3.3 >sigma
1 32 LYS 7 3 12 2 16.7 -0.4 .
1 33 ASP 4 4 7 2 28.6 0.5 .
1 34 HIS 6 3 5 2 40.0 1.3 >sigma
1 35 SER 4 2 8 1 12.5 -0.7 .
1 36 ALA 3 0 12 0 0.0 -1.7 >sigma
1 37 PRO 5 0 7 0 0.0 -1.7 >sigma
1 38 ASN 6 1 13 1 7.7 -1.1 >sigma
1 39 SER 4 10 22 4 18.2 -0.3 .
1 40 ARG 7 9 18 3 16.7 -0.4 .
1 41 PRO 5 4 13 3 23.1 0.0 .
1 42 ILE 6 17 37 10 27.0 0.3 .
1 43 ASP 4 10 17 7 41.2 1.4 >sigma
1 44 PHE 7 18 35 12 34.3 0.9 .
1 45 GLU 5 11 11 4 36.4 1.0 >sigma
1 46 MET 6 12 30 5 16.7 -0.4 .
1 47 LYS 7 15 20 5 25.0 0.2 .
1 48 LYS 7 17 45 4 8.9 -1.0 >sigma
1 49 LYS 7 13 18 6 33.3 0.8 .
1 50 ASP 4 16 20 9 45.0 1.7 >sigma
1 51 GLY 3 9 7 2 28.6 0.5 .
1 52 THR 4 8 19 4 21.1 -0.1 .
1 53 GLN 7 5 10 2 20.0 -0.2 .
1 54 GLN 7 4 12 2 16.7 -0.4 .
1 55 PHE 7 0 8 0 0.0 -1.7 >sigma
1 56 TYR 6 0 9 0 0.0 -1.7 >sigma
1 57 HIS 6 0 6 0 0.0 -1.7 >sigma
1 58 TYR 6 0 9 0 0.0 -1.7 >sigma
1 59 ALA 3 3 9 2 22.2 -0.0 .
1 60 SER 4 6 6 3 50.0 2.0 >sigma
1 61 SER 4 3 9 1 11.1 -0.8 .
1 62 VAL 5 0 8 0 0.0 -1.7 >sigma
1 63 LYS 7 1 15 0 0.0 -1.7 >sigma
1 64 PRO 5 0 10 0 0.0 -1.7 >sigma
1 65 ALA 3 2 24 2 8.3 -1.0 >sigma
1 66 ARG 7 15 26 6 23.1 0.0 .
1 67 VAL 5 23 36 10 27.8 0.4 .
1 68 ILE 6 30 39 10 25.6 0.2 .
1 69 PHE 7 17 18 3 16.7 -0.4 .
1 70 THR 4 13 16 5 31.3 0.7 .
1 71 ASP 4 6 9 3 33.3 0.8 .
1 72 SER 4 4 8 3 37.5 1.1 >sigma
1 73 LYS 7 4 9 2 22.2 -0.0 .
1 74 PRO 5 10 32 7 21.9 -0.0 .
1 75 GLU 5 16 24 6 25.0 0.2 .
1 76 ILE 6 23 44 11 25.0 0.2 .
1 77 GLU 5 14 26 8 30.8 0.6 .
1 78 LEU 7 17 33 7 21.2 -0.1 .
1 79 GLY 3 8 15 3 20.0 -0.2 .
1 80 LEU 7 11 23 5 21.7 -0.1 .
1 81 GLN 7 5 13 2 15.4 -0.5 .
1 82 SER 4 10 17 3 17.6 -0.4 .
1 83 GLY 3 9 18 5 27.8 0.4 .
1 84 GLN 7 14 16 7 43.8 1.6 >sigma
1 85 PHE 7 12 29 6 20.7 -0.1 .
1 86 TRP 10 11 27 4 14.8 -0.6 .
1 87 ARG 7 13 19 6 31.6 0.7 .
1 88 LYS 7 3 16 3 18.8 -0.3 .
1 89 PHE 7 1 27 1 3.7 -1.4 >sigma
1 90 GLU 5 3 19 2 10.5 -0.9 .
1 91 VAL 5 17 43 9 20.9 -0.1 .
1 92 TYR 6 22 23 8 34.8 0.9 .
1 93 GLU 5 13 27 8 29.6 0.5 .
1 94 GLY 3 2 6 2 33.3 0.8 .
1 95 ASP 4 3 5 2 40.0 1.3 >sigma
1 96 LYS 7 13 15 7 46.7 1.8 >sigma
1 97 LYS 7 16 16 8 50.0 2.0 >sigma
1 98 LEU 7 13 44 4 9.1 -1.0 .
1 99 PRO 5 3 8 3 37.5 1.1 >sigma
1 100 ILE 6 8 34 5 14.7 -0.6 .
1 101 LYS 7 9 9 3 33.3 0.8 .
1 102 LEU 7 18 25 8 32.0 0.7 .
1 103 VAL 5 12 26 6 23.1 0.0 .
1 104 SER 4 11 23 5 21.7 -0.1 .
1 105 TYR 6 20 33 6 18.2 -0.3 .
1 106 ASP 4 21 19 6 31.6 0.7 .
1 107 THR 4 14 17 4 23.5 0.1 .
1 108 VAL 5 10 15 4 26.7 0.3 .
1 109 LYS 7 9 22 4 18.2 -0.3 .
1 110 ASP 4 3 10 0 0.0 -1.7 >sigma
1 111 TYR 6 14 28 6 21.4 -0.1 .
1 112 ALA 3 16 29 7 24.1 0.1 .
1 113 TYR 6 15 28 6 21.4 -0.1 .
1 114 ILE 6 24 50 11 22.0 -0.0 .
1 115 ARG 7 16 29 8 27.6 0.4 .
1 116 PHE 7 16 32 6 18.8 -0.3 .
1 117 SER 4 13 15 7 46.7 1.8 >sigma
1 118 VAL 5 18 42 10 23.8 0.1 .
1 119 SER 4 7 11 5 45.5 1.7 >sigma
1 120 ASN 6 6 7 2 28.6 0.5 .
1 121 GLY 3 5 7 2 28.6 0.5 .
1 122 THR 4 8 22 4 18.2 -0.3 .
1 123 LYS 7 10 16 4 25.0 0.2 .
1 124 ALA 3 15 22 8 36.4 1.0 >sigma
1 125 VAL 5 19 35 10 28.6 0.5 .
1 126 LYS 7 15 21 7 33.3 0.8 .
1 127 ILE 6 19 46 8 17.4 -0.4 .
1 128 VAL 5 10 19 3 15.8 -0.5 .
1 129 SER 4 8 19 3 15.8 -0.5 .
1 130 SER 4 5 16 2 12.5 -0.7 .
1 131 THR 4 11 15 5 33.3 0.8 .
1 132 HIS 6 7 10 4 40.0 1.3 >sigma
1 133 PHE 7 4 12 0 0.0 -1.7 >sigma
1 134 ASN 6 0 10 0 0.0 -1.7 >sigma
1 135 ASN 6 2 9 2 22.2 -0.0 .
1 136 LYS 7 8 9 4 44.4 1.6 >sigma
1 137 GLU 5 7 9 4 44.4 1.6 >sigma
1 138 GLU 5 7 9 3 33.3 0.8 .
1 139 LYS 7 4 11 1 9.1 -1.0 .
1 140 TYR 6 7 20 2 10.0 -0.9 .
1 141 ASP 4 1 9 0 0.0 -1.7 >sigma
1 142 TYR 6 4 22 2 9.1 -1.0 .
1 143 THR 4 12 30 8 26.7 0.3 .
1 144 LEU 7 12 20 5 25.0 0.2 .
1 145 MET 6 22 41 8 19.5 -0.2 .
1 146 GLU 5 13 17 5 29.4 0.5 .
1 147 PHE 7 14 26 5 19.2 -0.2 .
1 148 ALA 3 11 21 7 33.3 0.8 .
1 149 GLN 7 7 16 3 18.8 -0.3 .
1 150 PRO 5 2 17 1 5.9 -1.2 >sigma
1 151 ILE 6 16 41 8 19.5 -0.2 .
1 152 TYR 6 8 16 4 25.0 0.2 .
1 153 ASN 6 12 20 6 30.0 0.6 .
1 154 SER 4 9 10 3 30.0 0.6 .
1 155 ALA 3 3 11 1 9.1 -1.0 .
1 156 ASP 4 1 9 1 11.1 -0.8 .
1 157 LYS 7 4 9 3 33.3 0.8 .
1 158 PHE 7 5 10 2 20.0 -0.2 .
1 159 LYS 7 1 8 0 0.0 -1.7 >sigma
1 160 THR 4 0 9 0 0.0 -1.7 >sigma
1 161 GLU 5 1 7 0 0.0 -1.7 >sigma
1 162 GLU 5 1 7 1 14.3 -0.6 .
1 163 ASP 4 1 4 1 25.0 0.2 .
stop_
save_
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