NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
571473 |
2m1w   |
18882 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2m1w
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 166
_NOE_completeness_stats.Total_atom_count 2488
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 729
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 39.5
_NOE_completeness_stats.Constraint_unexpanded_count 1692
_NOE_completeness_stats.Constraint_count 1692
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1866
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 148
_NOE_completeness_stats.Constraint_intraresidue_count 367
_NOE_completeness_stats.Constraint_surplus_count 78
_NOE_completeness_stats.Constraint_observed_count 1099
_NOE_completeness_stats.Constraint_expected_count 1799
_NOE_completeness_stats.Constraint_matched_count 710
_NOE_completeness_stats.Constraint_unmatched_count 389
_NOE_completeness_stats.Constraint_exp_nonobs_count 1089
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 343 561 231 41.2 0.7 .
medium-range 313 480 194 40.4 0.3 .
long-range 443 758 285 37.6 -1.0 >sigma
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 34 27 0 3 11 8 5 0 0 0 . 0 79.4 79.4
shell 2.00 2.50 210 131 0 12 27 50 30 11 1 0 . 0 62.4 64.8
shell 2.50 3.00 325 154 0 2 27 58 54 11 2 0 . 0 47.4 54.8
shell 3.00 3.50 463 172 0 0 27 70 49 25 1 0 . 0 37.1 46.9
shell 3.50 4.00 767 226 0 0 2 46 118 56 4 0 . 0 29.5 39.5
shell 4.00 4.50 1052 196 0 0 0 1 77 102 14 2 . 0 18.6 31.8
shell 4.50 5.00 1455 130 0 0 0 0 7 72 48 3 . 0 8.9 24.1
shell 5.00 5.50 1706 55 0 0 0 0 0 3 29 23 . 0 3.2 18.1
shell 5.50 6.00 1864 8 0 0 0 0 0 0 7 1 . 0 0.4 14.0
shell 6.00 6.50 2217 0 0 0 0 0 0 0 0 0 . 0 0.0 10.9
shell 6.50 7.00 2523 0 0 0 0 0 0 0 0 0 . 0 0.0 8.7
shell 7.00 7.50 2639 0 0 0 0 0 0 0 0 0 . 0 0.0 7.2
shell 7.50 8.00 2921 0 0 0 0 0 0 0 0 0 . 0 0.0 6.0
shell 8.00 8.50 3211 0 0 0 0 0 0 0 0 0 . 0 0.0 5.1
shell 8.50 9.00 3403 0 0 0 0 0 0 0 0 0 . 0 0.0 4.4
sums . . 24790 1099 0 17 94 233 340 280 106 29 . 0 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 0 0 0 . . .
1 2 PRO 5 2 2 2 100.0 3.2 >sigma
1 3 LEU 7 5 8 3 37.5 0.0 .
1 4 GLY 3 3 9 1 11.1 -1.3 >sigma
1 5 SER 4 2 5 2 40.0 0.2 .
1 6 GLU 5 4 3 3 100.0 3.2 >sigma
1 7 GLU 5 11 5 4 80.0 2.2 >sigma
1 8 VAL 5 23 22 14 63.6 1.3 >sigma
1 9 PHE 7 7 12 5 41.7 0.2 .
1 10 LEU 7 28 37 18 48.6 0.6 .
1 11 LYS 7 5 12 5 41.7 0.2 .
1 12 PHE 7 18 47 14 29.8 -0.3 .
1 13 VAL 5 30 56 28 50.0 0.7 .
1 14 ILE 6 32 55 21 38.2 0.1 .
1 15 LEU 7 26 50 15 30.0 -0.3 .
1 16 HIS 6 14 38 12 31.6 -0.3 .
1 17 ALA 3 10 22 8 36.4 -0.0 .
1 18 GLU 5 4 8 2 25.0 -0.6 .
1 19 ASP 4 7 12 7 58.3 1.1 >sigma
1 20 ASP 4 13 17 6 35.3 -0.1 .
1 21 THR 4 20 22 11 50.0 0.7 .
1 22 ASP 4 15 14 10 71.4 1.7 >sigma
1 23 GLU 5 11 17 6 35.3 -0.1 .
1 24 ALA 3 23 32 16 50.0 0.7 .
1 25 LEU 7 30 40 21 52.5 0.8 .
1 26 ARG 7 13 16 10 62.5 1.3 >sigma
1 27 VAL 5 30 44 22 50.0 0.7 .
1 28 GLN 7 26 37 15 40.5 0.2 .
1 29 ASN 6 14 21 11 52.4 0.8 .
1 30 LEU 7 36 38 22 57.9 1.1 >sigma
1 31 LEU 7 64 72 38 52.8 0.8 .
1 32 GLN 7 10 16 5 31.3 -0.3 .
1 33 ASP 4 8 13 5 38.5 0.1 .
1 34 ASP 4 13 16 10 62.5 1.3 >sigma
1 35 PHE 7 27 39 13 33.3 -0.2 .
1 36 GLY 3 12 13 6 46.2 0.5 .
1 37 ILE 6 31 33 16 48.5 0.6 .
1 38 LYS 7 9 13 6 46.2 0.5 .
1 39 PRO 5 2 4 2 50.0 0.7 .
1 40 GLY 3 7 16 3 18.8 -0.9 .
1 41 ILE 6 25 31 12 38.7 0.1 .
1 42 ILE 6 40 51 22 43.1 0.3 .
1 43 PHE 7 22 45 17 37.8 0.1 .
1 44 ALA 3 9 16 7 43.8 0.3 .
1 45 GLU 5 5 15 4 26.7 -0.5 .
1 46 MET 6 19 23 14 60.9 1.2 >sigma
1 47 PRO 5 0 1 0 0.0 -1.8 >sigma
1 48 HIS 6 1 5 1 20.0 -0.8 .
1 49 GLY 3 0 6 0 0.0 -1.8 >sigma
1 50 ARG 7 0 6 0 0.0 -1.8 >sigma
1 51 GLN 7 0 6 0 0.0 -1.8 >sigma
1 52 HIS 6 0 6 0 0.0 -1.8 >sigma
1 53 LEU 7 2 8 2 25.0 -0.6 .
1 54 GLN 7 1 6 1 16.7 -1.0 >sigma
1 55 ASN 6 1 8 0 0.0 -1.8 >sigma
1 56 LEU 7 15 37 9 24.3 -0.6 .
1 57 ASP 4 6 15 5 33.3 -0.2 .
1 58 ASP 4 0 12 0 0.0 -1.8 >sigma
1 59 ALA 3 17 32 16 50.0 0.7 .
1 60 VAL 5 21 38 13 34.2 -0.1 .
1 61 ASN 6 2 10 0 0.0 -1.8 >sigma
1 62 GLY 3 1 13 1 7.7 -1.5 >sigma
1 63 SER 4 3 19 3 15.8 -1.0 >sigma
1 64 ALA 3 14 23 10 43.5 0.3 .
1 65 TRP 10 28 53 16 30.2 -0.3 .
1 66 THR 4 21 36 14 38.9 0.1 .
1 67 ILE 6 33 50 24 48.0 0.6 .
1 68 LEU 7 19 45 11 24.4 -0.6 .
1 69 LEU 7 25 43 14 32.6 -0.2 .
1 70 LEU 7 24 35 12 34.3 -0.1 .
1 71 THR 4 15 32 10 31.3 -0.3 .
1 72 GLU 5 9 11 7 63.6 1.3 >sigma
1 73 ASN 6 12 19 9 47.4 0.5 .
1 74 PHE 7 12 49 9 18.4 -0.9 .
1 75 LEU 7 24 34 13 38.2 0.1 .
1 76 ARG 7 6 12 5 41.7 0.2 .
1 77 ASP 4 4 12 2 16.7 -1.0 >sigma
1 78 THR 4 9 27 6 22.2 -0.7 .
1 79 TRP 10 24 39 13 33.3 -0.2 .
1 80 CYS 4 5 12 4 33.3 -0.2 .
1 81 ASN 6 7 16 5 31.3 -0.3 .
1 82 PHE 7 15 46 12 26.1 -0.5 .
1 83 GLN 7 2 9 2 22.2 -0.7 .
1 84 PHE 7 3 9 2 22.2 -0.7 .
1 85 TYR 6 5 17 1 5.9 -1.5 >sigma
1 86 THR 4 7 11 4 36.4 -0.0 .
1 87 SER 4 7 14 5 35.7 -0.1 .
1 88 LEU 7 16 42 8 19.0 -0.9 .
1 89 MET 6 20 23 12 52.2 0.8 .
1 90 ASN 6 13 17 10 58.8 1.1 >sigma
1 91 SER 4 13 19 9 47.4 0.5 .
1 92 VAL 5 33 45 24 53.3 0.8 .
1 93 ASN 6 9 14 7 50.0 0.7 .
1 94 ARG 7 2 11 2 18.2 -0.9 .
1 95 GLN 7 7 12 4 33.3 -0.2 .
1 96 HIS 6 2 4 1 25.0 -0.6 .
1 97 LYS 7 4 8 2 25.0 -0.6 .
1 98 TYR 6 11 37 7 18.9 -0.9 .
1 99 ASN 6 3 17 3 17.6 -1.0 .
1 100 SER 4 12 12 6 50.0 0.7 .
1 101 VAL 5 30 34 16 47.1 0.5 .
1 102 ILE 6 38 42 23 54.8 0.9 .
1 103 PRO 5 5 14 4 28.6 -0.4 .
1 104 MET 6 34 37 23 62.2 1.3 >sigma
1 105 ARG 7 8 8 4 50.0 0.7 .
1 106 PRO 5 2 11 1 9.1 -1.4 >sigma
1 107 LEU 7 19 23 9 39.1 0.1 .
1 108 ASN 6 12 9 8 88.9 2.6 >sigma
1 109 ASN 6 6 11 4 36.4 -0.0 .
1 110 PRO 5 0 1 0 0.0 -1.8 >sigma
1 111 LEU 7 13 23 8 34.8 -0.1 .
1 112 PRO 5 4 2 1 50.0 0.7 .
1 113 ARG 7 7 8 5 62.5 1.3 >sigma
1 114 GLU 5 0 5 0 0.0 -1.8 >sigma
1 115 ARG 7 7 11 3 27.3 -0.5 .
1 116 THR 4 25 27 16 59.3 1.1 >sigma
1 117 PRO 5 3 10 0 0.0 -1.8 >sigma
1 118 PHE 7 6 15 5 33.3 -0.2 .
1 119 ALA 3 19 26 11 42.3 0.3 .
1 120 LEU 7 27 53 18 34.0 -0.1 .
1 121 GLN 7 14 23 9 39.1 0.1 .
1 122 THR 4 5 15 2 13.3 -1.2 >sigma
1 123 ILE 6 13 32 8 25.0 -0.6 .
1 124 ASN 6 9 10 4 40.0 0.2 .
1 125 ALA 3 14 11 7 63.6 1.3 >sigma
1 126 LEU 7 53 62 37 59.7 1.1 >sigma
1 127 GLU 5 13 16 9 56.3 1.0 .
1 128 GLU 5 16 20 11 55.0 0.9 .
1 129 GLU 5 11 16 6 37.5 0.0 .
1 130 SER 4 8 12 5 41.7 0.2 .
1 131 ARG 7 1 6 1 16.7 -1.0 >sigma
1 132 GLY 3 0 12 0 0.0 -1.8 >sigma
1 133 PHE 7 25 43 16 37.2 0.0 .
1 134 PRO 5 6 12 3 25.0 -0.6 .
1 135 THR 4 9 16 4 25.0 -0.6 .
1 136 GLN 7 31 26 19 73.1 1.8 >sigma
1 137 VAL 5 54 52 37 71.2 1.7 >sigma
1 138 GLU 5 11 13 9 69.2 1.6 >sigma
1 139 ARG 7 9 14 4 28.6 -0.4 .
1 140 ILE 6 31 40 22 55.0 0.9 .
1 141 PHE 7 35 56 28 50.0 0.7 .
1 142 GLN 7 13 18 9 50.0 0.7 .
1 143 GLU 5 4 9 1 11.1 -1.3 >sigma
1 144 SER 4 3 8 2 25.0 -0.6 .
1 145 VAL 5 27 35 18 51.4 0.7 .
1 146 TYR 6 12 19 8 42.1 0.3 .
1 147 LYS 7 7 11 6 54.5 0.9 .
1 148 THR 4 19 22 13 59.1 1.1 >sigma
1 149 GLN 7 15 27 12 44.4 0.4 .
1 150 GLN 7 9 21 6 28.6 -0.4 .
1 151 THR 4 15 16 10 62.5 1.3 >sigma
1 152 ILE 6 30 37 20 54.1 0.9 .
1 153 TRP 10 26 39 13 33.3 -0.2 .
1 154 LYS 7 11 15 6 40.0 0.2 .
1 155 GLU 5 11 15 7 46.7 0.5 .
1 156 THR 4 13 25 9 36.0 -0.0 .
1 157 ARG 7 9 14 5 35.7 -0.1 .
1 158 ASN 6 7 13 5 38.5 0.1 .
1 159 MET 6 4 16 2 12.5 -1.2 >sigma
1 160 VAL 5 4 31 3 9.7 -1.4 >sigma
1 161 GLN 7 4 12 3 25.0 -0.6 .
1 162 ARG 7 0 11 0 0.0 -1.8 >sigma
1 163 GLN 7 0 6 0 0.0 -1.8 >sigma
1 164 PHE 7 2 14 2 14.3 -1.1 >sigma
1 165 ILE 6 6 17 6 35.3 -0.1 .
1 166 ALA 3 4 10 4 40.0 0.2 .
stop_
save_
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