NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
446054 |
2kl3   |
16382 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2kl3
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 132
_NOE_completeness_stats.Total_atom_count 1999
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 693
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 63.1
_NOE_completeness_stats.Constraint_unexpanded_count 2789
_NOE_completeness_stats.Constraint_count 2789
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2035
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 110
_NOE_completeness_stats.Constraint_intraresidue_count 397
_NOE_completeness_stats.Constraint_surplus_count 186
_NOE_completeness_stats.Constraint_observed_count 2096
_NOE_completeness_stats.Constraint_expected_count 1875
_NOE_completeness_stats.Constraint_matched_count 1183
_NOE_completeness_stats.Constraint_unmatched_count 913
_NOE_completeness_stats.Constraint_exp_nonobs_count 692
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 612 558 357 64.0 0.0 .
medium-range 530 401 267 66.6 0.9 .
long-range 954 916 559 61.0 -0.9 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 25 17 0 0 2 4 5 5 1 0 . 0 68.0 68.0
shell 2.00 2.50 228 180 0 7 44 39 42 26 15 4 . 3 78.9 77.9
shell 2.50 3.00 342 260 0 0 20 62 59 53 35 16 . 15 76.0 76.8
shell 3.00 3.50 459 314 0 0 2 24 64 63 62 61 . 38 68.4 73.1
shell 3.50 4.00 821 412 0 0 1 2 44 65 83 131 . 86 50.2 63.1
shell 4.00 4.50 1205 427 0 0 0 0 13 40 80 151 . 143 35.4 52.3
shell 4.50 5.00 1519 266 0 0 0 0 1 17 33 120 . 95 17.5 40.8
shell 5.00 5.50 1951 147 0 0 0 0 0 0 15 62 . 70 7.5 30.9
shell 5.50 6.00 2243 54 0 0 0 0 0 0 2 22 . 30 2.4 23.6
shell 6.00 6.50 2429 18 0 0 0 0 0 0 1 8 . 9 0.7 18.7
shell 6.50 7.00 2705 1 0 0 0 0 0 0 0 1 . 0 0.0 15.0
shell 7.00 7.50 2793 0 0 0 0 0 0 0 0 0 . 0 0.0 12.5
shell 7.50 8.00 3267 0 0 0 0 0 0 0 0 0 . 0 0.0 10.5
shell 8.00 8.50 3328 0 0 0 0 0 0 0 0 0 . 0 0.0 9.0
shell 8.50 9.00 3625 0 0 0 0 0 0 0 0 0 . 0 0.0 7.8
sums . . 26940 2096 0 7 69 131 228 269 327 576 . 489 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 21 19 14 73.7 0.8 .
1 2 GLU 5 9 11 8 72.7 0.7 .
1 3 PRO 5 9 14 8 57.1 -0.1 .
1 4 GLN 7 22 27 14 51.9 -0.4 .
1 5 SER 4 19 17 9 52.9 -0.3 .
1 6 ASP 4 23 22 15 68.2 0.5 .
1 7 ALA 3 28 32 23 71.9 0.7 .
1 8 HIS 6 30 28 20 71.4 0.7 .
1 9 VAL 5 35 27 16 59.3 -0.0 .
1 10 LEU 7 64 66 45 68.2 0.5 .
1 11 LYS 7 54 63 33 52.4 -0.4 .
1 12 SER 4 21 22 13 59.1 -0.0 .
1 13 ARG 7 41 34 19 55.9 -0.2 .
1 14 LEU 7 54 44 28 63.6 0.2 .
1 15 GLU 5 22 28 16 57.1 -0.1 .
1 16 TRP 10 24 21 14 66.7 0.4 .
1 17 GLY 3 14 12 5 41.7 -1.0 .
1 18 GLU 5 10 15 8 53.3 -0.3 .
1 19 PRO 5 15 12 7 58.3 -0.1 .
1 20 ALA 3 11 12 7 58.3 -0.1 .
1 21 PHE 7 53 57 40 70.2 0.6 .
1 22 THR 4 46 36 30 83.3 1.3 >sigma
1 23 ILE 6 68 57 44 77.2 1.0 .
1 24 LEU 7 62 71 31 43.7 -0.9 .
1 25 ASP 4 31 27 18 66.7 0.4 .
1 26 VAL 5 76 63 43 68.3 0.5 .
1 27 ARG 7 48 62 31 50.0 -0.5 .
1 28 ASP 4 28 24 16 66.7 0.4 .
1 29 ARG 7 35 31 17 54.8 -0.2 .
1 30 SER 4 27 16 12 75.0 0.9 .
1 31 THR 4 34 34 23 67.6 0.5 .
1 32 TYR 6 35 44 24 54.5 -0.3 .
1 33 ASN 6 36 24 18 75.0 0.9 .
1 34 ASP 4 33 22 16 72.7 0.7 .
1 35 GLY 3 21 22 8 36.4 -1.3 >sigma
1 36 HIS 6 34 38 22 57.9 -0.1 .
1 37 ILE 6 75 62 45 72.6 0.7 .
1 38 MET 6 56 32 21 65.6 0.3 .
1 39 GLY 3 14 8 6 75.0 0.9 .
1 40 ALA 3 38 30 21 70.0 0.6 .
1 41 MET 6 48 35 25 71.4 0.7 .
1 42 ALA 3 33 22 14 63.6 0.2 .
1 43 MET 6 57 62 38 61.3 0.1 .
1 44 PRO 5 37 39 24 61.5 0.1 .
1 45 ILE 6 73 59 44 74.6 0.8 .
1 46 GLU 5 21 14 11 78.6 1.1 >sigma
1 47 ASP 4 33 24 16 66.7 0.4 .
1 48 LEU 7 77 72 40 55.6 -0.2 .
1 49 VAL 5 57 36 25 69.4 0.6 .
1 50 ASP 4 19 12 5 41.7 -1.0 .
1 51 ARG 7 35 39 22 56.4 -0.2 .
1 52 ALA 3 51 42 33 78.6 1.1 >sigma
1 53 SER 4 20 21 14 66.7 0.4 .
1 54 SER 4 10 8 3 37.5 -1.2 >sigma
1 55 SER 4 20 16 12 75.0 0.9 .
1 56 LEU 7 60 58 35 60.3 0.1 .
1 57 GLU 5 26 23 16 69.6 0.6 .
1 58 LYS 7 43 39 27 69.2 0.5 .
1 59 SER 4 17 16 9 56.3 -0.2 .
1 60 ARG 7 36 38 22 57.9 -0.1 .
1 61 ASP 4 17 20 13 65.0 0.3 .
1 62 ILE 6 64 71 40 56.3 -0.2 .
1 63 TYR 6 67 49 40 81.6 1.2 >sigma
1 64 VAL 5 69 61 32 52.5 -0.4 .
1 65 TYR 6 44 61 32 52.5 -0.4 .
1 66 GLY 3 38 25 16 64.0 0.3 .
1 67 ALA 3 26 21 12 57.1 -0.1 .
1 68 GLY 3 10 13 7 53.8 -0.3 .
1 69 ASP 4 5 10 3 30.0 -1.6 >sigma
1 70 GLU 5 10 17 6 35.3 -1.3 >sigma
1 71 GLN 7 53 47 37 78.7 1.1 >sigma
1 72 THR 4 39 39 25 64.1 0.3 .
1 73 SER 4 10 19 8 42.1 -0.9 .
1 74 GLN 7 34 30 20 66.7 0.4 .
1 75 ALA 3 53 41 28 68.3 0.5 .
1 76 VAL 5 57 54 34 63.0 0.2 .
1 77 ASN 6 33 23 15 65.2 0.3 .
1 78 LEU 7 54 39 23 59.0 -0.0 .
1 79 LEU 7 103 76 54 71.1 0.6 .
1 80 ARG 7 36 36 22 61.1 0.1 .
1 81 SER 4 18 17 8 47.1 -0.7 .
1 82 ALA 3 35 23 17 73.9 0.8 .
1 83 GLY 3 16 15 7 46.7 -0.7 .
1 84 PHE 7 106 66 54 81.8 1.2 >sigma
1 85 GLU 5 19 18 11 61.1 0.1 .
1 86 HIS 6 24 23 15 65.2 0.3 .
1 87 VAL 5 54 50 26 52.0 -0.4 .
1 88 SER 4 32 24 22 91.7 1.8 >sigma
1 89 GLU 5 29 33 17 51.5 -0.4 .
1 90 LEU 7 67 55 38 69.1 0.5 .
1 91 LYS 7 29 26 18 69.2 0.5 .
1 92 GLY 3 15 9 6 66.7 0.4 .
1 93 GLY 3 24 19 11 57.9 -0.1 .
1 94 LEU 7 62 60 35 58.3 -0.1 .
1 95 ALA 3 29 18 12 66.7 0.4 .
1 96 ALA 3 22 20 11 55.0 -0.2 .
1 97 TRP 10 127 84 72 85.7 1.5 >sigma
1 98 LYS 7 47 37 27 73.0 0.8 .
1 99 ALA 3 19 16 10 62.5 0.2 .
1 100 ILE 6 54 48 34 70.8 0.6 .
1 101 GLY 3 11 12 5 41.7 -1.0 .
1 102 GLY 3 19 26 12 46.2 -0.7 .
1 103 PRO 5 28 27 14 51.9 -0.4 .
1 104 THR 4 47 34 28 82.4 1.3 >sigma
1 105 GLU 5 32 22 15 68.2 0.5 .
1 106 GLY 3 18 21 11 52.4 -0.4 .
1 107 ILE 6 33 21 12 57.1 -0.1 .
1 108 ILE 6 33 26 17 65.4 0.3 .
1 109 GLU 5 30 25 16 64.0 0.3 .
1 110 SER 4 12 10 4 40.0 -1.1 >sigma
1 111 ARG 7 15 14 6 42.9 -0.9 .
1 112 THR 4 10 8 7 87.5 1.6 >sigma
1 113 PRO 5 6 7 5 71.4 0.7 .
1 114 ALA 3 7 6 4 66.7 0.4 .
1 115 GLY 3 8 6 5 83.3 1.3 >sigma
1 116 ALA 3 7 5 4 80.0 1.1 >sigma
1 117 ASP 4 5 5 4 80.0 1.1 >sigma
1 118 ASP 4 6 6 5 83.3 1.3 >sigma
1 119 TYR 6 12 12 7 58.3 -0.1 .
1 120 ASN 6 9 6 3 50.0 -0.5 .
1 121 VAL 5 14 11 6 54.5 -0.3 .
1 122 VAL 5 8 8 5 62.5 0.2 .
1 123 SER 4 6 6 2 33.3 -1.4 >sigma
1 124 ARG 7 7 6 3 50.0 -0.5 .
1 125 LEU 7 7 7 4 57.1 -0.1 .
1 126 GLU 5 3 7 1 14.3 -2.5 >sigma
1 127 HIS 6 0 6 0 0.0 -3.3 >sigma
1 128 HIS 6 0 4 0 0.0 -3.3 >sigma
1 129 HIS 6 0 5 0 0.0 -3.3 >sigma
1 130 HIS 6 0 7 0 0.0 -3.3 >sigma
1 131 HIS 6 0 7 0 0.0 -3.3 >sigma
1 132 HIS 6 0 3 0 0.0 -3.3 >sigma
stop_
save_
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