NMR Restraints Grid |
Result table
image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
443411 | 2kel | 16153 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2kel save_NOE_Completeness _NOE_completeness_stats.Sf_category NOE_completeness_statistics _NOE_completeness_stats.Model_count 10 _NOE_completeness_stats.Residue_count 112 _NOE_completeness_stats.Total_atom_count 1562 _NOE_completeness_stats.Observable_atom_definition ob_standard _NOE_completeness_stats.Observable_atom_count 550 _NOE_completeness_stats.Use_intra_residue_restraints no _NOE_completeness_stats.Redundancy_threshold_pct 5.0 _NOE_completeness_stats.Distance_averaging_power 1.00 _NOE_completeness_stats.Completeness_cutoff 4.00 _NOE_completeness_stats.Completeness_cumulative_pct 64.2 _NOE_completeness_stats.Constraint_unexpanded_count 3717 _NOE_completeness_stats.Constraint_count 5938 _NOE_completeness_stats.Constraint_exp_unfiltered_count 2162 _NOE_completeness_stats.Constraint_exceptional_count 0 _NOE_completeness_stats.Constraint_nonobservable_count 54 _NOE_completeness_stats.Constraint_intraresidue_count 1158 _NOE_completeness_stats.Constraint_surplus_count 1098 _NOE_completeness_stats.Constraint_observed_count 3628 _NOE_completeness_stats.Constraint_expected_count 1674 _NOE_completeness_stats.Constraint_matched_count 1074 _NOE_completeness_stats.Constraint_unmatched_count 2554 _NOE_completeness_stats.Constraint_exp_nonobs_count 600 _NOE_completeness_stats.Details ; A detailed methodology description is available at: http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html Please note that the contributions in ambiguous restraints are considered separate 'restraints' for the sets defined below. The cut off for all statistics except those in the by-shell table is given below by the above tag: _NOE_completeness_stats.Completeness_cutoff Description of the tags in this list: * 1 * Administrative tag * 2 * Administrative tag * 3 * Administrative tag * 4 * Number of models * 5 * Number of residues * 6 * Number of atoms * 7 * Standard set name of observable atom definitions see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999). * 8 * Observable atom(group)s * 9 * Include intra residue restraints * 10 * Surplus threshold for determining redundant restraints * 11 * Power for averaging the distance over models * 12 * Up to what distance are NOEs expected * 13 * Cumulative completeness percentage * 14 * Number of unexpanded restraints in restraint list. * 15 * Number of restraints in restraint list. Set U * 16 * Expected restraints based on criteria in list. Set V Set V differs from set B only if intra residue restraints are analyzed. * 17 * Exceptional restraints, i.e. with an unknown atom.Set E * 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O Even though restraints with these atom types might have been observed they are excluded from the analysis. * 19 * Intra-residue restraints if not to be analyzed. Set I * 20 * Surplus like double restraints. Set S * 21 * Observed restraints. Set A = U - (E u O u I u S) * 22 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 23 * Observed restraints matched to the expected. Set M = A n B * 24 * Observed restraints that were not expected. Set C = A - M * 25 * Expected restraints that were not observed. Set D = B - M * 26 * This tag Description of the tags in the class table: * 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts. Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular. * 2 * Observed restraints. Set A = U - (E u O u I u S) * 3 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 4 * Observed restraints matched to the expected. Set M = A n B * 5 * Completeness percentage * 6 * Standard deviation from the average over the classes. * 7 * Extra information * 8 * Administrative tag * 9 * Administrative tag Description of the tags in the shell table. The first row shows the lower limit of the shells requested and The last row shows the total number of restraints over the shells. * 1 * Description of the content of the row: edges, shell, or sums. The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others. * 2 * Lower limit of shell of expected restraints. * 3 * Upper limit of shell of expected restraints. * 4 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 5 * Observed restraints matched to the expected. Set M = A n B * 6 * Matched restraints with experimental distance in shell 1 * 7 * Matched restraints with experimental distance in shell 2 * 8 * Matched restraints with experimental distance in shell 3 * 9 * Matched restraints with experimental distance in shell 4 * 10 * Matched restraints with experimental distance in shell 5 * 11 * Matched restraints with experimental distance in shell 6 * 12 * Matched restraints with experimental distance in shell 7 * 13 * Matched restraints with experimental distance in shell 8 * 14 * Matched restraints with experimental distance in shell 9 * 15 * Matched restraints overflowing the last shell * 16 * Completeness percentage for this shell * 17 * Completeness percentage up to upper limit of this shell * 18 * Administrative tag * 19 * Administrative tag Description of the tags in the residue table: * 1 * Chain identifier * 2 * Residue number * 3 * Residue name * 4 * Observable atom(group)s for this residue. * 5 * Observed restraints. Set A = U - (E u O u I u S) * 6 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 7 * Observed restraints matched to the expected. Set M = A n B * 8 * Completeness percentage * 9 * Standard deviation from the average over the residues. * 10 * Extra information * 11 * Administrative tag * 12 * Administrative tag ; loop_ _NOE_completeness_class.Type _NOE_completeness_class.Constraint_observed_count _NOE_completeness_class.Constraint_expected_count _NOE_completeness_class.Constraint_matched_count _NOE_completeness_class.Completeness_cumulative_pct _NOE_completeness_class.Std_dev _NOE_completeness_class.Details intraresidue 0 0 0 . . "no intras" sequential 894 468 354 75.6 1.3 >sigma medium-range 1261 518 328 63.3 -0.0 . long-range 335 164 98 59.8 -0.4 . intermolecular 1138 524 294 56.1 -0.8 . stop_ loop_ _NOE_completeness_shell.Type _NOE_completeness_shell.Shell_start _NOE_completeness_shell.Shell_end _NOE_completeness_shell.Constraint_expected_count _NOE_completeness_shell.Constraint_matched_count _NOE_completeness_shell.Matched_shell_1 _NOE_completeness_shell.Matched_shell_2 _NOE_completeness_shell.Matched_shell_3 _NOE_completeness_shell.Matched_shell_4 _NOE_completeness_shell.Matched_shell_5 _NOE_completeness_shell.Matched_shell_6 _NOE_completeness_shell.Matched_shell_7 _NOE_completeness_shell.Matched_shell_8 _NOE_completeness_shell.Matched_shell_9 _NOE_completeness_shell.Matched_shell_overflow _NOE_completeness_shell.Completeness_shell_pct _NOE_completeness_shell.Completeness_cumulative_pct edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . . shell 0.00 2.00 56 42 6 4 0 0 0 0 0 0 . 14 75.0 75.0 shell 2.00 2.50 173 146 66 34 6 2 0 0 0 0 . 32 84.4 82.1 shell 2.50 3.00 319 248 22 108 36 6 6 0 0 0 . 68 77.7 79.6 shell 3.00 3.50 409 245 2 12 86 44 14 2 0 4 . 81 59.9 71.2 shell 3.50 4.00 717 393 0 16 62 116 64 10 6 4 . 115 54.8 64.2 shell 4.00 4.50 1076 498 4 22 32 66 116 56 26 22 . 154 46.3 57.2 shell 4.50 5.00 1516 577 0 2 20 66 72 140 60 34 . 183 38.1 50.4 shell 5.00 5.50 1698 459 0 2 6 28 42 64 60 36 . 221 27.0 43.7 shell 5.50 6.00 2128 397 0 0 4 17 32 64 50 30 . 200 18.7 37.1 shell 6.00 6.50 2205 211 0 0 2 9 14 20 18 12 . 136 9.6 31.2 shell 6.50 7.00 2456 153 0 0 0 0 2 8 30 12 . 101 6.2 26.4 shell 7.00 7.50 2561 121 0 0 0 0 0 6 10 16 . 89 4.7 22.8 shell 7.50 8.00 2900 52 0 0 0 0 0 4 12 4 . 32 1.8 19.4 shell 8.00 8.50 3172 40 0 0 0 2 0 0 2 4 . 32 1.3 16.7 shell 8.50 9.00 3352 8 0 0 0 0 0 0 0 0 . 8 0.2 14.5 sums . . 24738 3590 100 200 254 356 362 374 274 178 . 1,466 . . stop_ loop_ _NOE_completeness_comp.Entity_assembly_ID _NOE_completeness_comp.Comp_index_ID _NOE_completeness_comp.Comp_ID _NOE_completeness_comp.Obs_atom_count _NOE_completeness_comp.Constraint_observed_count _NOE_completeness_comp.Constraint_expected_count _NOE_completeness_comp.Constraint_matched_count _NOE_completeness_comp.Completeness_cumulative_pct _NOE_completeness_comp.Std_dev _NOE_completeness_comp.Details 1 11 LYS 7 8 5 0 0.0 -3.7 >sigma 1 12 GLN 7 10 13 1 7.7 -3.2 >sigma 1 13 LYS 7 51 15 11 73.3 0.5 . 1 14 ALA 3 63 22 14 63.6 -0.0 . 1 15 VAL 5 72 20 18 90.0 1.5 >sigma 1 16 PHE 7 138 58 41 70.7 0.4 . 1 17 GLY 3 37 12 7 58.3 -0.3 . 1 18 ILE 6 112 50 37 74.0 0.6 . 1 19 TYR 6 73 23 21 91.3 1.6 >sigma 1 20 MET 6 101 56 34 60.7 -0.2 . 1 21 ASP 4 53 19 16 84.2 1.2 >sigma 1 22 LYS 7 62 28 15 53.6 -0.6 . 1 23 ASP 4 32 16 13 81.3 1.0 . 1 24 LEU 7 95 65 31 47.7 -0.9 . 1 25 LYS 7 106 61 34 55.7 -0.5 . 1 26 THR 4 70 32 19 59.4 -0.3 . 1 27 ARG 7 83 40 24 60.0 -0.2 . 1 28 LEU 7 138 77 49 63.6 -0.0 . 1 29 LYS 7 82 41 28 68.3 0.2 . 1 30 VAL 5 75 32 22 68.8 0.3 . 1 31 TYR 6 150 55 44 80.0 0.9 . 1 32 CYS 4 79 32 25 78.1 0.8 . 1 33 ALA 3 41 18 14 77.8 0.8 . 1 34 LYS 7 53 25 13 52.0 -0.7 . 1 35 ASN 6 59 33 22 66.7 0.2 . 1 36 ASN 6 31 9 9 100.0 2.1 >sigma 1 37 LEU 7 98 47 31 66.0 0.1 . 1 38 GLN 7 56 23 14 60.9 -0.2 . 1 39 LEU 7 98 49 33 67.3 0.2 . 1 40 THR 4 96 38 31 81.6 1.0 >sigma 1 41 GLN 7 85 41 24 58.5 -0.3 . 1 42 ALA 3 83 35 25 71.4 0.4 . 1 43 ILE 6 135 71 41 57.7 -0.4 . 1 44 GLU 5 84 38 26 68.4 0.3 . 1 45 GLU 5 66 24 14 58.3 -0.3 . 1 46 ALA 3 81 39 25 64.1 0.0 . 1 47 ILE 6 120 76 43 56.6 -0.4 . 1 48 LYS 7 84 56 25 44.6 -1.1 >sigma 1 49 GLU 5 65 31 16 51.6 -0.7 . 1 50 TYR 6 156 55 43 78.2 0.8 . 1 51 LEU 7 162 69 47 68.1 0.2 . 1 52 GLN 7 46 22 13 59.1 -0.3 . 1 53 LYS 7 71 34 18 52.9 -0.6 . 1 54 ARG 7 71 32 18 56.3 -0.4 . 1 55 ASN 6 48 14 10 71.4 0.4 . 1 56 GLY 3 51 23 15 65.2 0.1 . 2 11 LYS 7 8 5 0 0.0 -3.7 >sigma 2 12 GLN 7 10 13 1 7.7 -3.2 >sigma 2 13 LYS 7 51 15 11 73.3 0.5 . 2 14 ALA 3 63 22 14 63.6 -0.0 . 2 15 VAL 5 72 20 18 90.0 1.5 >sigma 2 16 PHE 7 138 58 41 70.7 0.4 . 2 17 GLY 3 37 12 7 58.3 -0.3 . 2 18 ILE 6 112 50 37 74.0 0.6 . 2 19 TYR 6 73 23 21 91.3 1.6 >sigma 2 20 MET 6 101 56 34 60.7 -0.2 . 2 21 ASP 4 53 19 16 84.2 1.2 >sigma 2 22 LYS 7 62 28 15 53.6 -0.6 . 2 23 ASP 4 32 16 13 81.3 1.0 . 2 24 LEU 7 95 65 31 47.7 -0.9 . 2 25 LYS 7 106 61 34 55.7 -0.5 . 2 26 THR 4 70 32 19 59.4 -0.3 . 2 27 ARG 7 83 40 24 60.0 -0.2 . 2 28 LEU 7 138 77 49 63.6 -0.0 . 2 29 LYS 7 81 41 28 68.3 0.2 . 2 30 VAL 5 75 32 22 68.8 0.3 . 2 31 TYR 6 150 55 44 80.0 0.9 . 2 32 CYS 4 79 32 25 78.1 0.8 . 2 33 ALA 3 41 18 14 77.8 0.8 . 2 34 LYS 7 53 25 13 52.0 -0.7 . 2 35 ASN 6 59 33 22 66.7 0.2 . 2 36 ASN 6 31 9 9 100.0 2.1 >sigma 2 37 LEU 7 97 47 31 66.0 0.1 . 2 38 GLN 7 56 23 14 60.9 -0.2 . 2 39 LEU 7 96 49 33 67.3 0.2 . 2 40 THR 4 96 38 31 81.6 1.0 >sigma 2 41 GLN 7 85 41 24 58.5 -0.3 . 2 42 ALA 3 83 35 25 71.4 0.4 . 2 43 ILE 6 135 71 41 57.7 -0.4 . 2 44 GLU 5 84 38 26 68.4 0.3 . 2 45 GLU 5 66 24 14 58.3 -0.3 . 2 46 ALA 3 81 39 25 64.1 0.0 . 2 47 ILE 6 120 76 43 56.6 -0.4 . 2 48 LYS 7 84 56 25 44.6 -1.1 >sigma 2 49 GLU 5 65 31 16 51.6 -0.7 . 2 50 TYR 6 156 55 43 78.2 0.8 . 2 51 LEU 7 162 69 47 68.1 0.2 . 2 52 GLN 7 46 22 13 59.1 -0.3 . 2 53 LYS 7 71 34 18 52.9 -0.6 . 2 54 ARG 7 71 32 18 56.3 -0.4 . 2 55 ASN 6 48 14 10 71.4 0.4 . 2 56 GLY 3 51 23 15 65.2 0.1 . stop_ save_
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