NMR Restraints Grid |
Result table
image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
430512 | 2joh | 15394 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2joh save_NOE_Completeness _NOE_completeness_stats.Sf_category NOE_completeness_statistics _NOE_completeness_stats.Model_count 15 _NOE_completeness_stats.Residue_count 148 _NOE_completeness_stats.Total_atom_count 1698 _NOE_completeness_stats.Observable_atom_definition ob_standard _NOE_completeness_stats.Observable_atom_count 588 _NOE_completeness_stats.Use_intra_residue_restraints no _NOE_completeness_stats.Redundancy_threshold_pct 5.0 _NOE_completeness_stats.Distance_averaging_power 1.00 _NOE_completeness_stats.Completeness_cutoff 4.00 _NOE_completeness_stats.Completeness_cumulative_pct 36.6 _NOE_completeness_stats.Constraint_unexpanded_count 2356 _NOE_completeness_stats.Constraint_count 2360 _NOE_completeness_stats.Constraint_exp_unfiltered_count 1963 _NOE_completeness_stats.Constraint_exceptional_count 0 _NOE_completeness_stats.Constraint_nonobservable_count 5 _NOE_completeness_stats.Constraint_intraresidue_count 508 _NOE_completeness_stats.Constraint_surplus_count 33 _NOE_completeness_stats.Constraint_observed_count 1814 _NOE_completeness_stats.Constraint_expected_count 1945 _NOE_completeness_stats.Constraint_matched_count 712 _NOE_completeness_stats.Constraint_unmatched_count 1102 _NOE_completeness_stats.Constraint_exp_nonobs_count 1233 _NOE_completeness_stats.Details ; A detailed methodology description is available at: http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html Please note that the contributions in ambiguous restraints are considered separate 'restraints' for the sets defined below. The cut off for all statistics except those in the by-shell table is given below by the above tag: _NOE_completeness_stats.Completeness_cutoff Description of the tags in this list: * 1 * Administrative tag * 2 * Administrative tag * 3 * Administrative tag * 4 * Number of models * 5 * Number of residues * 6 * Number of atoms * 7 * Standard set name of observable atom definitions see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999). * 8 * Observable atom(group)s * 9 * Include intra residue restraints * 10 * Surplus threshold for determining redundant restraints * 11 * Power for averaging the distance over models * 12 * Up to what distance are NOEs expected * 13 * Cumulative completeness percentage * 14 * Number of unexpanded restraints in restraint list. * 15 * Number of restraints in restraint list. Set U * 16 * Expected restraints based on criteria in list. Set V Set V differs from set B only if intra residue restraints are analyzed. * 17 * Exceptional restraints, i.e. with an unknown atom.Set E * 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O Even though restraints with these atom types might have been observed they are excluded from the analysis. * 19 * Intra-residue restraints if not to be analyzed. Set I * 20 * Surplus like double restraints. Set S * 21 * Observed restraints. Set A = U - (E u O u I u S) * 22 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 23 * Observed restraints matched to the expected. Set M = A n B * 24 * Observed restraints that were not expected. Set C = A - M * 25 * Expected restraints that were not observed. Set D = B - M * 26 * This tag Description of the tags in the class table: * 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts. Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular. * 2 * Observed restraints. Set A = U - (E u O u I u S) * 3 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 4 * Observed restraints matched to the expected. Set M = A n B * 5 * Completeness percentage * 6 * Standard deviation from the average over the classes. * 7 * Extra information * 8 * Administrative tag * 9 * Administrative tag Description of the tags in the shell table. The first row shows the lower limit of the shells requested and The last row shows the total number of restraints over the shells. * 1 * Description of the content of the row: edges, shell, or sums. The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others. * 2 * Lower limit of shell of expected restraints. * 3 * Upper limit of shell of expected restraints. * 4 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 5 * Observed restraints matched to the expected. Set M = A n B * 6 * Matched restraints with experimental distance in shell 1 * 7 * Matched restraints with experimental distance in shell 2 * 8 * Matched restraints with experimental distance in shell 3 * 9 * Matched restraints with experimental distance in shell 4 * 10 * Matched restraints with experimental distance in shell 5 * 11 * Matched restraints with experimental distance in shell 6 * 12 * Matched restraints with experimental distance in shell 7 * 13 * Matched restraints with experimental distance in shell 8 * 14 * Matched restraints with experimental distance in shell 9 * 15 * Matched restraints overflowing the last shell * 16 * Completeness percentage for this shell * 17 * Completeness percentage up to upper limit of this shell * 18 * Administrative tag * 19 * Administrative tag Description of the tags in the residue table: * 1 * Chain identifier * 2 * Residue number * 3 * Residue name * 4 * Observable atom(group)s for this residue. * 5 * Observed restraints. Set A = U - (E u O u I u S) * 6 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 7 * Observed restraints matched to the expected. Set M = A n B * 8 * Completeness percentage * 9 * Standard deviation from the average over the residues. * 10 * Extra information * 11 * Administrative tag * 12 * Administrative tag ; loop_ _NOE_completeness_class.Type _NOE_completeness_class.Constraint_observed_count _NOE_completeness_class.Constraint_expected_count _NOE_completeness_class.Constraint_matched_count _NOE_completeness_class.Completeness_cumulative_pct _NOE_completeness_class.Std_dev _NOE_completeness_class.Details intraresidue 0 0 0 . . "no intras" sequential 620 559 300 53.7 1.0 . medium-range 762 689 242 35.1 -0.2 . long-range 432 697 170 24.4 -0.8 . intermolecular 0 0 0 . . "no multimer" stop_ loop_ _NOE_completeness_shell.Type _NOE_completeness_shell.Shell_start _NOE_completeness_shell.Shell_end _NOE_completeness_shell.Constraint_expected_count _NOE_completeness_shell.Constraint_matched_count _NOE_completeness_shell.Matched_shell_1 _NOE_completeness_shell.Matched_shell_2 _NOE_completeness_shell.Matched_shell_3 _NOE_completeness_shell.Matched_shell_4 _NOE_completeness_shell.Matched_shell_5 _NOE_completeness_shell.Matched_shell_6 _NOE_completeness_shell.Matched_shell_7 _NOE_completeness_shell.Matched_shell_8 _NOE_completeness_shell.Matched_shell_9 _NOE_completeness_shell.Matched_shell_overflow _NOE_completeness_shell.Completeness_shell_pct _NOE_completeness_shell.Completeness_cumulative_pct edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . . shell 0.00 2.00 70 38 1 10 5 7 5 5 2 0 . 3 54.3 54.3 shell 2.00 2.50 205 124 0 16 28 20 19 13 11 3 . 14 60.5 58.9 shell 2.50 3.00 301 147 0 4 24 17 31 30 23 5 . 13 48.8 53.6 shell 3.00 3.50 524 195 0 0 3 16 30 33 31 25 . 57 37.2 45.8 shell 3.50 4.00 845 208 0 0 0 10 10 28 34 26 . 100 24.6 36.6 shell 4.00 4.50 1269 305 0 0 0 4 10 22 52 32 . 185 24.0 31.6 shell 4.50 5.00 1601 237 0 0 0 0 2 10 21 20 . 184 14.8 26.0 shell 5.00 5.50 1851 211 0 0 0 0 0 2 6 20 . 183 11.4 22.0 shell 5.50 6.00 2202 199 0 0 0 0 1 1 0 7 . 190 9.0 18.8 shell 6.00 6.50 2471 134 0 0 0 0 0 0 0 4 . 130 5.4 15.9 shell 6.50 7.00 2590 8 0 0 0 0 0 0 0 0 . 8 0.3 13.0 shell 7.00 7.50 2812 6 0 0 0 0 0 0 0 0 . 6 0.2 10.8 shell 7.50 8.00 3121 2 0 0 0 0 0 0 0 0 . 2 0.1 9.1 shell 8.00 8.50 3314 0 0 0 0 0 0 0 0 0 . 0 0.0 7.8 shell 8.50 9.00 3541 0 0 0 0 0 0 0 0 0 . 0 0.0 6.8 sums . . 26717 1814 1 30 60 74 108 144 180 142 . 1,075 . . stop_ loop_ _NOE_completeness_comp.Entity_assembly_ID _NOE_completeness_comp.Comp_index_ID _NOE_completeness_comp.Comp_ID _NOE_completeness_comp.Obs_atom_count _NOE_completeness_comp.Constraint_observed_count _NOE_completeness_comp.Constraint_expected_count _NOE_completeness_comp.Constraint_matched_count _NOE_completeness_comp.Completeness_cumulative_pct _NOE_completeness_comp.Std_dev _NOE_completeness_comp.Details 1 36 LEU 7 23 37 8 21.6 -1.2 >sigma 1 37 GLY 3 6 8 3 37.5 -0.1 . 1 38 GLY 3 7 7 5 71.4 2.3 >sigma 1 39 TYR 6 33 36 12 33.3 -0.4 . 1 40 MET 6 55 31 12 38.7 -0.0 . 1 41 LEU 7 45 35 16 45.7 0.5 . 1 42 GLY 3 16 25 13 52.0 0.9 . 1 43 SER 4 18 11 4 36.4 -0.2 . 1 44 ALA 3 28 22 12 54.5 1.1 >sigma 1 45 MET 6 67 63 32 50.8 0.8 . 1 46 SER 4 13 14 6 42.9 0.3 . 1 47 ARG 7 26 35 10 28.6 -0.7 . 1 48 PRO 5 30 41 14 34.1 -0.3 . 1 49 LEU 7 26 47 11 23.4 -1.1 >sigma 1 50 ILE 6 46 50 17 34.0 -0.4 . 1 51 HIS 6 23 24 5 20.8 -1.3 >sigma 1 52 PHE 7 28 52 12 23.1 -1.1 >sigma 1 53 GLY 3 9 8 6 75.0 2.5 >sigma 1 54 ASN 6 31 27 13 48.1 0.6 . 1 55 ASP 4 24 12 8 66.7 1.9 >sigma 1 56 TYR 6 19 20 11 55.0 1.1 >sigma 1 57 GLU 5 44 39 21 53.8 1.0 >sigma 1 58 ASP 4 31 31 12 38.7 -0.0 . 1 59 ARG 7 37 38 17 44.7 0.4 . 1 60 TYR 6 34 47 18 38.3 -0.1 . 1 61 TYR 6 36 68 13 19.1 -1.4 >sigma 1 62 ARG 7 21 33 9 27.3 -0.8 . 1 63 GLU 5 31 25 13 52.0 0.9 . 1 64 ASN 6 33 57 10 17.5 -1.5 >sigma 1 65 MET 6 61 54 16 29.6 -0.7 . 1 66 TYR 6 23 21 7 33.3 -0.4 . 1 67 ARG 7 44 45 14 31.1 -0.6 . 1 68 TYR 6 31 68 11 16.2 -1.6 >sigma 1 69 PRO 5 32 43 9 20.9 -1.3 >sigma 1 70 ASN 6 28 40 12 30.0 -0.6 . 1 71 GLN 7 53 39 19 48.7 0.7 . 1 72 VAL 5 66 61 28 45.9 0.5 . 1 73 TYR 6 45 50 18 36.0 -0.2 . 1 74 TYR 6 47 51 23 45.1 0.4 . 1 75 ARG 7 26 34 7 20.6 -1.3 >sigma 1 76 PRO 5 17 37 9 24.3 -1.0 >sigma 1 77 VAL 5 52 59 24 40.7 0.1 . 1 78 ASP 4 17 12 8 66.7 1.9 >sigma 1 79 GLN 7 22 25 9 36.0 -0.2 . 1 80 TYR 6 33 27 17 63.0 1.7 >sigma 1 81 SER 4 10 9 6 66.7 1.9 >sigma 1 82 ASN 6 24 21 8 38.1 -0.1 . 1 83 GLN 7 20 51 7 13.7 -1.8 >sigma 1 84 ASN 6 32 31 13 41.9 0.2 . 1 85 ASN 6 16 20 5 25.0 -1.0 . 1 86 PHE 7 24 38 6 15.8 -1.6 >sigma 1 87 VAL 5 63 65 27 41.5 0.2 . 1 88 HIS 6 23 16 9 56.3 1.2 >sigma 1 89 ASP 4 29 17 10 58.8 1.4 >sigma 1 90 CYS 4 42 34 18 52.9 1.0 . 1 91 VAL 5 53 66 30 45.5 0.4 . 1 92 ASN 6 34 22 14 63.6 1.7 >sigma 1 93 ILE 6 74 60 19 31.7 -0.5 . 1 94 THR 4 64 52 26 50.0 0.8 . 1 95 VAL 5 67 67 28 41.8 0.2 . 1 96 LYS 7 57 47 21 44.7 0.4 . 1 97 GLN 7 29 38 5 13.2 -1.8 >sigma 1 98 HIS 6 21 31 4 12.9 -1.8 >sigma 1 99 THR 4 27 36 12 33.3 -0.4 . 1 100 VAL 5 33 37 14 37.8 -0.1 . 1 101 THR 4 10 16 3 18.8 -1.4 >sigma 1 102 THR 4 21 34 6 17.6 -1.5 >sigma 1 103 THR 4 22 27 9 33.3 -0.4 . 1 104 THR 4 13 15 5 33.3 -0.4 . 1 105 LYS 7 26 34 8 23.5 -1.1 >sigma 1 106 GLY 3 15 14 6 42.9 0.3 . 1 107 GLU 5 24 33 9 27.3 -0.8 . 1 108 ASN 6 18 8 6 75.0 2.5 >sigma 1 109 PHE 7 41 40 16 40.0 0.1 . 1 110 THR 4 26 20 9 45.0 0.4 . 1 111 GLU 5 27 17 10 58.8 1.4 >sigma 1 112 THR 4 34 33 16 48.5 0.7 . 1 113 ASP 4 45 38 21 55.3 1.1 >sigma 1 114 ILE 6 70 59 25 42.4 0.2 . 1 115 LYS 7 55 44 20 45.5 0.4 . 1 116 ILE 6 81 90 26 28.9 -0.7 . 1 117 MET 6 79 82 36 43.9 0.3 . 1 118 GLU 5 38 39 15 38.5 -0.0 . 1 119 ARG 7 42 68 14 20.6 -1.3 >sigma 1 120 VAL 5 66 65 29 44.6 0.4 . 1 121 VAL 5 64 68 30 44.1 0.4 . 1 122 GLU 5 35 42 14 33.3 -0.4 . 1 123 GLN 7 34 29 13 44.8 0.4 . 1 124 MET 6 60 62 28 45.2 0.4 . 1 125 CYS 4 33 38 16 42.1 0.2 . 1 126 ILE 6 47 58 20 34.5 -0.3 . 1 127 THR 4 34 35 18 51.4 0.9 . 1 128 GLN 7 45 55 19 34.5 -0.3 . 1 129 TYR 6 34 50 11 22.0 -1.2 >sigma 1 130 GLN 7 28 23 9 39.1 0.0 . 1 131 GLN 7 29 35 13 37.1 -0.1 . 1 132 GLU 5 38 49 18 36.7 -0.2 . 1 133 SER 4 24 26 8 30.8 -0.6 . 1 134 GLN 7 28 21 7 33.3 -0.4 . 1 135 ALA 3 19 27 8 29.6 -0.7 . 1 136 ALA 3 31 38 14 36.8 -0.2 . 1 137 TYR 6 32 18 4 22.2 -1.2 >sigma 1 138 GLN 7 27 19 7 36.8 -0.2 . 1 139 ARG 7 32 41 13 31.7 -0.5 . 1 140 ALA 3 22 13 9 69.2 2.1 >sigma stop_ save_
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