NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype
384057 1k5w 5194 cing 4-filtered-FRED Wattos check stereo assignment distance


data_1k5w


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        34
    _Stereo_assign_list.Swap_count           0
    _Stereo_assign_list.Swap_percentage      0.0
    _Stereo_assign_list.Deassign_count       0
    _Stereo_assign_list.Deassign_percentage  0.0
    _Stereo_assign_list.Model_count          20
    _Stereo_assign_list.Total_e_low_states   0.061
    _Stereo_assign_list.Total_e_high_states  145.467
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1   4 LEU QD 19 no 100.0 100.0  4.312  4.312 0.000 23 1 no 0.000 0 0 
       1  11 LEU QD  5 no 100.0 100.0 11.065 11.065 0.000 31 5 no 0.000 0 0 
       1  13 TYR QD 34 no 100.0 100.0  1.870  1.870 0.000  1 0 no 0.000 0 0 
       1  14 VAL QG 24 no 100.0 100.0  6.958  6.958 0.000 16 0 no 0.000 0 0 
       1  20 LEU QD 17 no 100.0 100.0  8.471  8.471 0.000 24 2 no 0.000 0 0 
       1  22 VAL QG  2 no 100.0 100.0  7.542  7.543 0.000 35 5 no 0.051 0 0 
       1  23 VAL QG  7 no 100.0 100.0 11.259 11.259 0.000 29 0 no 0.000 0 0 
       1  25 LEU QD 22 no 100.0 100.0  6.142  6.142 0.000 19 0 no 0.000 0 0 
       1  28 LYS QB 33 no 100.0 100.0  0.430  0.430 0.000  1 0 no 0.000 0 0 
       1  30 LEU QD 12 no 100.0 100.0  6.596  6.596 0.001 26 1 no 0.086 0 0 
       1  35 VAL QG 27 no 100.0   0.0  0.000  0.000 0.000  8 0 no 0.000 0 0 
       1  38 LEU QD 26 no 100.0 100.0  2.566  2.566 0.000 11 0 no 0.000 0 0 
       1  43 VAL QG 15 no 100.0 100.0  2.564  2.564 0.000 25 3 no 0.067 0 0 
       1  47 LEU QD  8 no 100.0 100.0  8.916  8.916 0.000 29 6 no 0.007 0 0 
       1  54 LEU QD 23 no 100.0  99.9  2.696  2.700 0.003 17 1 no 0.118 0 0 
       1  64 ASN QB 32 no 100.0 100.0  0.262  0.262 0.000  1 0 no 0.000 0 0 
       1  66 LEU QD  4 no 100.0 100.0  4.004  4.004 0.000 31 0 no 0.016 0 0 
       1  78 VAL QG 28 no 100.0  99.6  0.129  0.129 0.001  6 1 no 0.070 0 0 
       1  80 PHE QD 31 no 100.0   0.0  0.000  0.000 0.000  1 0 no 0.000 0 0 
       1  86 VAL QG 18 no 100.0 100.0  4.998  4.998 0.000 24 4 no 0.011 0 0 
       1  88 VAL QG 16 no 100.0 100.0  2.827  2.827 0.000 25 9 no 0.051 0 0 
       1  89 VAL QG  9 no 100.0  99.9  3.258  3.260 0.003 28 4 no 0.080 0 0 
       1  90 VAL QG 11 no 100.0 100.0  0.386  0.386 0.000 27 7 no 0.000 0 0 
       1  92 VAL QG 21 no 100.0 100.0  6.330  6.330 0.000 21 5 no 0.017 0 0 
       1  93 LEU QD 14 no 100.0  99.9  2.590  2.593 0.003 25 0 no 0.118 0 0 
       1 107 VAL QG 10 no 100.0  98.2  1.479  1.506 0.028 27 4 no 0.262 0 0 
       1 109 VAL QG 13 no 100.0 100.0 12.892 12.892 0.000 26 6 no 0.000 0 0 
       1 118 LEU QD 25 no 100.0 100.0  6.845  6.845 0.000 12 0 no 0.000 0 0 
       1 125 LEU QD 20 no 100.0  99.7  6.007  6.024 0.017 22 0 no 0.150 0 0 
       1 134 GLN QB 30 no 100.0   0.0  0.000  0.000 0.000  1 0 no 0.000 0 0 
       1 138 LEU QD  1 no 100.0  99.9  5.896  5.900 0.005 45 6 no 0.094 0 0 
       1 144 VAL QG  3 no 100.0 100.0  1.794  1.794 0.000 34 2 no 0.050 0 0 
       1 148 LEU QD  6 no 100.0 100.0  3.746  3.746 0.000 30 6 no 0.043 0 0 
       1 150 VAL QG 29 no 100.0 100.0  0.578  0.578 0.000  5 0 no 0.000 0 0 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Thursday, May 23, 2024 2:27:55 PM GMT (wattos1)