NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id cing stage program type subtype subsubtype item_count
463323 2yra cing 2-parsed STAR distance NOE simple 14


data_2yra_MR_file_constraints


save_Conversion_project
    _Study_list.Sf_category  study_list 
    _Study_list.Entry_ID     parsed_2yra 
    _Study_list.ID           1 

    loop_
        _Study.ID 
        _Study.Name 
        _Study.Type 
        _Study.Details 
        _Study.Entry_ID 
        _Study.Study_list_ID 

        1   "Conversion project"    NMR   .   parsed_2yra   1   
    stop_

save_


save_entry_information
    _Entry.Sf_category                  entry_information 
    _Entry.ID                           parsed_2yra 
    _Entry.Title                       "Original constraint list(s)" 
    _Entry.Version_type                 original 
    _Entry.Submission_date              . 
    _Entry.Accession_date               . 
    _Entry.Last_release_date            . 
    _Entry.Original_release_date        . 
    _Entry.Origination                  . 
    _Entry.NMR_STAR_version             3.1 
    _Entry.Original_NMR_STAR_version    . 
    _Entry.Experimental_method          NMR 
    _Entry.Experimental_method_subtype  . 

    loop_
        _Related_entries.Database_name 
        _Related_entries.Database_accession_code 
        _Related_entries.Relationship 
        _Related_entries.Entry_ID 

        PDB   2yra   "Master copy"    parsed_2yra   
    stop_

save_


save_global_Org_file_characteristics
    _Constraint_stat_list.Sf_category  constraint_statistics 
    _Constraint_stat_list.Entry_ID     parsed_2yra 
    _Constraint_stat_list.ID           1 

    loop_
        _Constraint_file.ID 
        _Constraint_file.Constraint_filename 
        _Constraint_file.Software_ID 
        _Constraint_file.Software_label 
        _Constraint_file.Software_name 
        _Constraint_file.Block_ID 
        _Constraint_file.Constraint_type 
        _Constraint_file.Constraint_subtype 
        _Constraint_file.Constraint_subsubtype 
        _Constraint_file.Constraint_number 
        _Constraint_file.Entry_ID 
        _Constraint_file.Constraint_stat_list_ID 

        1   2yra.mr   .   .   "MR format"    1    comment                  "Not applicable"    "Not applicable"      0   parsed_2yra   1   
        1   2yra.mr   .   .    DYANA/DIANA   2   "dihedral combo"           ambi               "Not applicable"      0   parsed_2yra   1   
        1   2yra.mr   .   .    DYANA/DIANA   3   "dihedral angle"          "Not applicable"    "Not applicable"    252   parsed_2yra   1   
        1   2yra.mr   .   .    DYANA/DIANA   4    distance                  NOE                 simple             643   parsed_2yra   1   
        1   2yra.mr   .   .    DYANA/DIANA   5   "dihedral angle"          "Not applicable"    "Not applicable"     62   parsed_2yra   1   
        1   2yra.mr   .   .    DYANA/DIANA   6    distance                  NOE                 simple              14   parsed_2yra   1   
        1   2yra.mr   .   .    DYANA/DIANA   7    distance                 "disulfide bond"     simple               0   parsed_2yra   1   
        1   2yra.mr   .   .   "MR format"    8   "nomenclature mapping"    "Not applicable"    "Not applicable"      0   parsed_2yra   1   
    stop_

save_


save_DYANA/DIANA_distance_constraints_6
    _Distance_constraint_list.Sf_category         distance_constraints 
    _Distance_constraint_list.Entry_ID            parsed_2yra 
    _Distance_constraint_list.ID                  1 
    _Distance_constraint_list.Constraint_type     NOE 
    _Distance_constraint_list.Constraint_file_ID  1 
    _Distance_constraint_list.Block_ID            6 
    _Distance_constraint_list.Details            "Generated by Wattos" 

    loop_
        _Dist_constraint_tree.Constraint_ID 
        _Dist_constraint_tree.Node_ID 
        _Dist_constraint_tree.Down_node_ID 
        _Dist_constraint_tree.Right_node_ID 
        _Dist_constraint_tree.Logic_operation 
        _Dist_constraint_tree.Entry_ID 
        _Dist_constraint_tree.Distance_constraint_list_ID 

         1   1   .   .   .   parsed_2yra   1   
         2   1   .   .   .   parsed_2yra   1   
         3   1   .   .   .   parsed_2yra   1   
         4   1   .   .   .   parsed_2yra   1   
         5   1   .   .   .   parsed_2yra   1   
         6   1   .   .   .   parsed_2yra   1   
         7   1   .   .   .   parsed_2yra   1   
         8   1   .   .   .   parsed_2yra   1   
         9   1   .   .   .   parsed_2yra   1   
        10   1   .   .   .   parsed_2yra   1   
        11   1   .   .   .   parsed_2yra   1   
        12   1   .   .   .   parsed_2yra   1   
        13   1   .   .   .   parsed_2yra   1   
        14   1   .   .   .   parsed_2yra   1   
    stop_


    loop_
        _Dist_constraint.Tree_node_member_constraint_ID 
        _Dist_constraint.Tree_node_member_node_ID 
        _Dist_constraint.Constraint_tree_node_member_ID 
        _Dist_constraint.Assembly_atom_ID 
        _Dist_constraint.Entity_assembly_ID 
        _Dist_constraint.Entity_ID 
        _Dist_constraint.Comp_index_ID 
        _Dist_constraint.Seq_ID 
        _Dist_constraint.Comp_ID 
        _Dist_constraint.Atom_ID 
        _Dist_constraint.Resonance_ID 
        _Dist_constraint.Auth_asym_ID 
        _Dist_constraint.Auth_seq_ID 
        _Dist_constraint.Auth_comp_ID 
        _Dist_constraint.Auth_atom_ID 
        _Dist_constraint.Entry_ID 
        _Dist_constraint.Distance_constraint_list_ID 

         1   1   1   .   .   .   .   .   .   .   .   .    8   CYSS   HB2   parsed_2yra   1   
         1   1   2   .   .   .   .   .   .   .   .   .   56   TRP    HE1   parsed_2yra   1   
         2   1   1   .   .   .   .   .   .   .   .   .   62   PHE    HB2   parsed_2yra   1   
         2   1   2   .   .   .   .   .   .   .   .   .   62   PHE    HN    parsed_2yra   1   
         3   1   1   .   .   .   .   .   .   .   .   .   62   PHE    HB3   parsed_2yra   1   
         3   1   2   .   .   .   .   .   .   .   .   .   62   PHE    HN    parsed_2yra   1   
         4   1   1   .   .   .   .   .   .   .   .   .    8   CYSS   HB3   parsed_2yra   1   
         4   1   2   .   .   .   .   .   .   .   .   .   50   CYSS   HB3   parsed_2yra   1   
         5   1   1   .   .   .   .   .   .   .   .   .   19   LYS    HA    parsed_2yra   1   
         5   1   2   .   .   .   .   .   .   .   .   .   34   TYR    HA    parsed_2yra   1   
         6   1   1   .   .   .   .   .   .   .   .   .   20   THR    HN    parsed_2yra   1   
         6   1   2   .   .   .   .   .   .   .   .   .   33   THR    HN    parsed_2yra   1   
         7   1   1   .   .   .   .   .   .   .   .   .   21   THR    HA    parsed_2yra   1   
         7   1   2   .   .   .   .   .   .   .   .   .   32   ILE    HA    parsed_2yra   1   
         8   1   1   .   .   .   .   .   .   .   .   .   65   LYS    HA    parsed_2yra   1   
         8   1   2   .   .   .   .   .   .   .   .   .   40   TYR    HA    parsed_2yra   1   
         9   1   1   .   .   .   .   .   .   .   .   .   63   CYSS   HA    parsed_2yra   1   
         9   1   2   .   .   .   .   .   .   .   .   .   42   ILE    HA    parsed_2yra   1   
        10   1   1   .   .   .   .   .   .   .   .   .   23   HIS    HD2   parsed_2yra   1   
        10   1   2   .   .   .   .   .   .   .   .   .   27   VAL    QG2   parsed_2yra   1   
        11   1   1   .   .   .   .   .   .   .   .   .   32   ILE    QD1   parsed_2yra   1   
        11   1   2   .   .   .   .   .   .   .   .   .   11   LEU    QD1   parsed_2yra   1   
        12   1   1   .   .   .   .   .   .   .   .   .    8   CYSS   HB3   parsed_2yra   1   
        12   1   2   .   .   .   .   .   .   .   .   .   56   TRP    HE1   parsed_2yra   1   
        13   1   1   .   .   .   .   .   .   .   .   .   62   PHE    HB2   parsed_2yra   1   
        13   1   2   .   .   .   .   .   .   .   .   .   63   CYSS   HN    parsed_2yra   1   
        14   1   1   .   .   .   .   .   .   .   .   .   62   PHE    HB3   parsed_2yra   1   
        14   1   2   .   .   .   .   .   .   .   .   .   63   CYSS   HN    parsed_2yra   1   
    stop_


    loop_
        _Dist_constraint_value.Constraint_ID 
        _Dist_constraint_value.Tree_node_ID 
        _Dist_constraint_value.Source_experiment_ID 
        _Dist_constraint_value.Spectral_peak_ID 
        _Dist_constraint_value.Intensity_val 
        _Dist_constraint_value.Intensity_lower_val_err 
        _Dist_constraint_value.Intensity_upper_val_err 
        _Dist_constraint_value.Distance_val 
        _Dist_constraint_value.Distance_lower_bound_val 
        _Dist_constraint_value.Distance_upper_bound_val 
        _Dist_constraint_value.Entry_ID 
        _Dist_constraint_value.Distance_constraint_list_ID 

         1   1   .   .   .   .   .   .   .   3.50   parsed_2yra   1   
         2   1   .   .   .   .   .   .   .   3.50   parsed_2yra   1   
         3   1   .   .   .   .   .   .   .   3.50   parsed_2yra   1   
         4   1   .   .   .   .   .   .   .   4.00   parsed_2yra   1   
         5   1   .   .   .   .   .   .   .   2.80   parsed_2yra   1   
         6   1   .   .   .   .   .   .   .   2.80   parsed_2yra   1   
         7   1   .   .   .   .   .   .   .   4.00   parsed_2yra   1   
         8   1   .   .   .   .   .   .   .   2.80   parsed_2yra   1   
         9   1   .   .   .   .   .   .   .   2.80   parsed_2yra   1   
        10   1   .   .   .   .   .   .   .   4.50   parsed_2yra   1   
        11   1   .   .   .   .   .   .   .   3.50   parsed_2yra   1   
        12   1   .   .   .   .   .   .   .   2.80   parsed_2yra   1   
        13   1   .   .   .   .   .   .   .   3.50   parsed_2yra   1   
        14   1   .   .   .   .   .   .   .   3.50   parsed_2yra   1   
    stop_


    loop_
        _Dist_constraint_comment_org.ID 
        _Dist_constraint_comment_org.Comment_text 
        _Dist_constraint_comment_org.Comment_begin_line 
        _Dist_constraint_comment_org.Comment_begin_column 
        _Dist_constraint_comment_org.Comment_end_line 
        _Dist_constraint_comment_org.Comment_end_column 
        _Dist_constraint_comment_org.Entry_ID 
        _Dist_constraint_comment_org.Distance_constraint_list_ID 

        1   "upl3 with lol"      1   37    1   50   parsed_2yra   1   
        2   "under water"        7   37    7   48   parsed_2yra   1   
        3   "same shift"         8   37    8   47   parsed_2yra   1   
        4    upl2               16   37   16   41   parsed_2yra   1   
        5   "upl3 with lol"     18   37   18   50   parsed_2yra   1   
        6   "upl4 with lol2"    20   37   20   51   parsed_2yra   1   
    stop_

save_





Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Thursday, July 4, 2024 8:27:39 AM GMT (wattos1)