NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id cing stage program type subtype subsubtype
29760 1bcb cing 2-parsed STAR distance hydrogen bond simple


data_1bcb_MR_file_constraints


save_Conversion_project
    _Study_list.Sf_category  study_list 
    _Study_list.Entry_ID     parsed_1bcb 
    _Study_list.ID           1 

    loop_
        _Study.ID 
        _Study.Name 
        _Study.Type 
        _Study.Details 
        _Study.Entry_ID 
        _Study.Study_list_ID 

        1   "Conversion project"    NMR   .   parsed_1bcb   1   
    stop_

save_


save_entry_information
    _Entry.Sf_category                  entry_information 
    _Entry.ID                           parsed_1bcb 
    _Entry.Title                       "Original constraint list(s)" 
    _Entry.Version_type                 original 
    _Entry.Submission_date              . 
    _Entry.Accession_date               . 
    _Entry.Last_release_date            . 
    _Entry.Original_release_date        . 
    _Entry.Origination                  . 
    _Entry.NMR_STAR_version             3.1 
    _Entry.Original_NMR_STAR_version    . 
    _Entry.Experimental_method          NMR 
    _Entry.Experimental_method_subtype  . 

    loop_
        _Related_entries.Database_name 
        _Related_entries.Database_accession_code 
        _Related_entries.Relationship 
        _Related_entries.Entry_ID 

        PDB   1bcb   "Master copy"    parsed_1bcb   
    stop_

save_


save_global_Org_file_characteristics
    _Constraint_stat_list.Sf_category  constraint_statistics 
    _Constraint_stat_list.Entry_ID     parsed_1bcb 
    _Constraint_stat_list.ID           1 

    loop_
        _Constraint_file.ID 
        _Constraint_file.Constraint_filename 
        _Constraint_file.Software_ID 
        _Constraint_file.Software_label 
        _Constraint_file.Software_name 
        _Constraint_file.Block_ID 
        _Constraint_file.Constraint_type 
        _Constraint_file.Constraint_subtype 
        _Constraint_file.Constraint_subsubtype 
        _Constraint_file.Constraint_number 
        _Constraint_file.Entry_ID 
        _Constraint_file.Constraint_stat_list_ID 

        1   1bcb.mr   .   .   "MR format"    1    comment                  "Not applicable"    "Not applicable"    0   parsed_1bcb   1   
        1   1bcb.mr   .   .    XPLOR/CNS     2    distance                 "hydrogen bond"      simple             0   parsed_1bcb   1   
        1   1bcb.mr   .   .    XPLOR/CNS     3    distance                  NOE                 simple             0   parsed_1bcb   1   
        1   1bcb.mr   .   .    DISCOVER      4   "dihedral angle"          "Not applicable"    "Not applicable"    0   parsed_1bcb   1   
        1   1bcb.mr   .   .   "MR format"    5   "nomenclature mapping"    "Not applicable"    "Not applicable"    0   parsed_1bcb   1   
    stop_

save_


save_CNS/XPLOR_distance_constraints_2
    _Distance_constraint_list.Sf_category         distance_constraints 
    _Distance_constraint_list.Entry_ID            parsed_1bcb 
    _Distance_constraint_list.ID                  1 
    _Distance_constraint_list.Constraint_type    "hydrogen bond" 
    _Distance_constraint_list.Constraint_file_ID  1 
    _Distance_constraint_list.Block_ID            2 
    _Distance_constraint_list.Details            "Generated by Wattos" 

    loop_
        _Dist_constraint_comment_org.ID 
        _Dist_constraint_comment_org.Comment_text 
        _Dist_constraint_comment_org.Comment_begin_line 
        _Dist_constraint_comment_org.Comment_begin_column 
        _Dist_constraint_comment_org.Comment_end_line 
        _Dist_constraint_comment_org.Comment_end_column 
        _Dist_constraint_comment_org.Entry_ID 
        _Dist_constraint_comment_org.Distance_constraint_list_ID 

        1   "BIOSYM restraint 1"           2   1    2   20   parsed_1bcb   1   
        2   "WC H bonded atoms"            4   1    4   19   parsed_1bcb   1   
        3    !                            11   1   11    3   parsed_1bcb   1   
        4   "hoogsteen H bonded atoms"    24   1   25   26   parsed_1bcb   1   
    stop_


    loop_
        _Dist_constraint_parse_err.ID 
        _Dist_constraint_parse_err.Content 
        _Dist_constraint_parse_err.Begin_line 
        _Dist_constraint_parse_err.Begin_column 
        _Dist_constraint_parse_err.End_line 
        _Dist_constraint_parse_err.End_column 
        _Dist_constraint_parse_err.Entry_ID 
        _Dist_constraint_parse_err.Distance_constraint_list_ID 

        1   
;
#distance
!WC H bonded atoms
1:A5'_1:N1         1:T3'_12:N3         2.720  2.920 25.00 25.00 1000.000
1:A5'_1:N6         1:T3'_12:O4         2.850  3.050 25.00 25.00 1000.000
!
1:G_2:N1           1:C_11:N3           2.850  3.050 25.00 25.00 1000.000
1:G_2:O6           1:C_11:N4           2.810  3.010 25.00 25.00 1000.000
1:G_2:N2           1:C_11:O2           2.760  2.960 25.00 25.00 1000.000
!!
1:A_3:N1           1:T_10:N3           2.720  2.920 25.00 25.00 1000.000
1:A_3:N6           1:T_10:O4           2.850  3.050 25.00 25.00 1000.000
!
1:A_4:N1           1:T_9:N3            2.720  2.920 25.00 25.00 1000.000
1:A_4:N6           1:T_9:O4            2.850  3.050 25.00 25.00 1000.000
!
1:G_5:N1           1:C_8:N3            2.850  3.050 25.00 25.00 1000.000
1:G_5:O6           1:C_8:N4            2.810  3.010 25.00 25.00 1000.000
1:G_5:N2           1:C_8:O2            2.760  2.960 25.00 25.00 1000.000
!
1:A3'_6:N1         1:T5'_7:N3          2.720  2.920 25.00 25.00 1000.000
1:A3'_6:N6         1:T5'_7:O4          2.850  3.050 25.00 25.00 1000.000
!
!hoogsteen H bonded atoms
1:T5'_13:N3        1:A5'_1:N7          2.700  3.000 25.00 25.00 1000.000 
1:T5'_13:O4        1:A5'_1:N6          2.700  3.000 25.00 25.00 1000.000
!
1:C_14:N3          1:G_2:N7            2.700  3.000 25.00 25.00 1000.000
1:C_14:N4          1:G_2:O6            2.700  3.000 25.00 25.00 1000.000
!
1:T_15:N3          1:A_3:N7            2.700  3.000 25.00 25.00 1000.000 
1:T_15:O4          1:A_3:N6            2.700  3.000 25.00 25.00 1000.000
!
1:T_16:N3          1:A_4:N7            2.700  3.000 25.00 25.00 1000.000 
1:T_16:O4          1:A_4:N6            2.700  3.000 25.00 25.00 1000.000
!
1:C_17:N3          1:G_5:N7            2.700  3.000 25.00 25.00 1000.000
1:C_17:N4          1:G_5:O6            2.700  3.000 25.00 25.00 1000.000
!
1:T3'_18:N3        1:A3'_6:N7          2.700  3.000 25.00 25.00 1000.000 
1:T3'_18:O4        1:A3'_6:N6          2.700  3.000 25.00 25.00 1000.000
;
   3   1   42   72   parsed_1bcb   1   
    stop_

save_





Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Sunday, April 28, 2024 9:13:11 AM GMT (wattos1)