NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage position program type subtype subsubtype
24523 2k33 15737 cing 1-original 3 DYANA/DIANA distance NOE simple


#NOE restraints Intra Carb
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#BAC 1   Intra
201 BAC3 H1    201 BAC3 Q2      5.5 # Bac1H1-QAc2  6
201 BAC3 H1    201 BAC3 HN2     4.5 # Bac1H1-HN2   18 ov. HN4
201 BAC3 H2    201 BAC3 HN2     4.5 # Bac1H2-HN2  17 ov. HN4, ov. H3
201 BAC3 H3    201 BAC3 HN2     4.5 # Bac1H2-HN2  15 ov. HN4, ov. H3
201 BAC3 H3    201 BAC3 Q4      5.5 # Bac1H5-QAc4  7
201 BAC3 H5    201 BAC3 Q4      5.5 # Bac1H5-QAc4  6
201 BAC3 H5    201 BAC3 HN4     4.0 # Bac1H5-HN4  28,19
201 BAC3 Q4    201 BAC3 Q6      3.5 # Bac1H6-QAc4  53 (two methyls)
201 BAC3 Q6    201 BAC3 HN4     3.8 # Bac1H6-HN4  31, 21
201 BAC3 Q2    201 BAC3 HN2     3.5 # Bac1Q2-HN2  36, 20
201 BAC3 Q4    201 BAC3 HN4     3.0 # Bac1Q4-HN4  64, 43
# Inter 
201 BAC3 H2    202 AGN4 H1      4.5 # increased Gna2H1-Bac1H2 ov. H3 21
201 BAC3 H3    202 AGN4 H1      4.0 # Bac1H3-Gna2H1 ov. H2 23 
201 BAC3 H4    202 AGN4 H1      4.5 # Bac1H4-Gna2H1 26 ov. 8
201 BAC3 H5    202 AGN4 H1      5.0 # Bac1H5-Gna2H1  11
201 BAC3 Q2    202 AGN4 H1      5.0 # Gna2H1-Bac1QAc2  11, 8
201 BAC3 Q2    202 AGN4 H4      4.0 # Gna2H4-Bac1QAc2  23
201 BAC3 Q2    202 AGN4 H5      3.2 # Gna2H5-Bac1QAc2  86, 59 ov. H3/H5
201 BAC3 Q2    202 AGN4 H61     3.5 # Gna2H6-Bac1QAc2  42
201 BAC3 Q2    202 AGN4 H62     4.0 # Gna2H6'-Bac1QAc2 26
201 BAC3 Q4    202 AGN4 H1      4.0 # Gna2H1-Bac1QAc4  29
201 BAC3 Q4    202 AGN4 H2      5.5 # Gna2H2-Bac1QAc4 8
201 BAC3 Q4    202 AGN4 HN2     5.5 #  5
201 BAC3 Q6    202 AGN4 H1      5.0 # Bac1H6-Gna2H1     12
201 BAC3 HN4   202 AGN4 H1      3.0 # Gna2H1-Bac1HN4         51
#201 BAC3 HN4   202 AGN4 H2                         #  overlap GalNAcH2-Bac1 H2
201 BAC3 HN4   202 AGN4 H3      4.8 # Gna2H3-Bac1HN4         17
#201 BAC3 HN2   202 AGN4 H3        # Gna2H3-Bac1HN2         10 ov. H3/H5
201 BAC3 HN2   202 AGN4 H5      5.0 # Gna2H5-Bac1HN2         10 ov. H3/H5
#201 BAC3 HN4   202 AGN4 HN2     6.0 # Gna2HN-Bac1HN2          5  ???

201 BAC3 Q2    203 AGN4 H1      5.0 # 11,11 NEW MARIO pink
######################################################################
#GalNAc 2   Intra  H3/H5 ov.
202 AGN4 H1    202 AGN4 HN2     4.5 # Gna2H1-HN         18
202 AGN4 H2    202 AGN4 Q2      5.0 # Gna2H2-QAc      11
202 AGN4 H2    202 AGN4 HN2     3.5 # Gna2H2-HN         45
202 AGN4 H3    202 AGN4 HN2     3.5 # Gna2H3-HN         46  ov. H3/H5
202 AGN4 H4    202 AGN4 H61     4.0 # Gna2H4-H6       25
202 AGN4 H4    202 AGN4 H62     3.5 # Gna2H4-H6'      39
202 AGN4 H5    202 AGN4 H61     2.8 # increased Gna2H6-H5       113 close to diag.,68
202 AGN4 H5    202 AGN4 H62     2.8 # Gna2H6'-H5      93,55

#Inter
202 AGN4 H2    203 AGN4 H5      4.0 # Gna3H5-Gna2H2     40 ol
202 AGN4 H3    203 AGN4 H5      5.5 # Gna2H3-Gna3H5  8
202 AGN4 H3    203 AGN4 HN2     5.5 # 6
202 AGN4 H4    203 AGN4 H1      2.4 # Gna3H1-Gna2H4     143
202 AGN4 H4    203 AGN4 H2      4.6 # increased Gna2H4-Gna3H2     34 ov.
202 AGN4 H5    203 AGN4 H1      3.8 # increased Gna2H5-Gna3H1     47, 32 ov. H3
202 AGN4 H5    203 AGN4 HN2     6.0 # 4 overlap H3/H5
202 AGN4 H61   203 AGN4 H1      3.0 # increased Gna2H6-Gna3H1     50
202 AGN4 H61   203 AGN4 Q2      4.0 # Gna2H6-Gna3QAc    28 
202 AGN4 H61   203 AGN4 HN2     4.0 # Gna2H6-Gna3HN         26, 18
202 AGN4 H62   203 AGN4 H1      3.0 # increased Gna2H6'-Gna3H1    78, 39
202 AGN4 H62   203 AGN4 Q2      4.0 # Gna2H6'-Gna3QAc   23
202 AGN4 H62   203 AGN4 HN2     4.0 # increased Gna2H6'-Gna3HN         36, 24 ov.

######################################################################
#GalNAc 3   Intra 
203 AGN4 H1    203 AGN4 Q2      5.2 # Gna3H1-QAc       9
203 AGN4 H1    203 AGN4 HN2     5.0 # Gna3H1-HN         28 ov.
203 AGN4 H2    203 AGN4 Q2      5.0 # Gna3H2-QAc       10
203 AGN4 H2    203 AGN4 HN2     4.0 # Gna3H2-HN         27, 19
203 AGN4 H3    203 AGN4 HN2     3.5 # 43 ok
203 AGN4 H4    203 AGN4 H61     3.5 # Gna3H6-H4       38
203 AGN4 H4    203 AGN4 H62     3.8 # Gna3H6'-H4      33
203 AGN4 H5    203 AGN4 HN2     5.5 # 9
203 AGN4 H5    203 AGN4 H61     2.8 # Gna3H6-H5        96
203 AGN4 H5    203 AGN4 H62     3.2 # Gna3H6'-H5       87,63

#Inter
#203 AGN4 H1    204 AG34 H5      5.5 # increased Gna4H5-Gna3H1 17,18 not so sure spin diff?
203 AGN4 H2    204 AG34 H5      3.5 # Gna4H5-Gna3H2     42
203 AGN4 H3    204 AG34  H1     5.0 # Gna4H1-Gna3H3     69 ov. H4 shoulder
203 AGN4 H4    204 AG34 H1      2.6 # Gna3H4-Gna4H1     183 
203 AGN4 H5    204 AG34 H1      3.8 # Gna3H5-Gna4H1     40, 41,33
203 AGN4 H61   204 AG34 H1      3.0 # increase Gna3H6-Gna4H1     120,51
203 AGN4 H61   204 AG34 Q2      3.8 # Gna3H6-Gna4QAc    38,35
203 AGN4 H61   204 AG34 HN2     4.0 # Gna3H6-Gna4HN         39,23, 11
203 AGN4 H62   204 AG34 H1      3.0 # increased Gna3H6'-Gna4H1    140,54
203 AGN4 H62   204 AG34 Q2      3.8 # Gna4QAc-Gna3H6'   16, 35
203 AGN4 H62   204 AG34 HN2     4.0 # Gna3H6'-Gna4HN         33, 22/11

######################################################################
#GalNAc 4   Intra 
204 AG34 H1    204 AG34 Q2      5.0 # Gna4H1-QAc       12
204 AG34 H1    204 AG34 HN2     3.5 # Gna4H1-HN         40
#204 AG34 H2    204 AG34 Q2      5.5 # Gna4QAc-H2       6 #ov. Glc5' H1
204 AG34 H2    204 AG34 HN2     2.8 # Gna4H2-HN        139,91
204 AG34 H3    204 AG34 HN2     3.0 # Gna4H3-HN         58, 41
204 AG34 H4    204 AG34 H61     4.0 # Gna4H6-H4        27
204 AG34 H4    204 AG34 H62     3.8 # Gna4H6'-H4       37
204 AG34 H4    204 AG34 HN2     5.5 # 9
204 AG34 H4    204 AG34 H62     3.8 # Gna4H6'-H4       35 
204 AG34 H5    204 AG34 H61     3.2 # Gna4H6-H5        73
204 AG34 H5    204 AG34 H62     3.2 # Gna4H6'-H5       74


#Inter 
204 AG34 H1    205 AGN4 HN2     5.5  # 5 very weak, real peak? NEW MARIO pink
204 AG34 H4    205 AGN4 H1      2.6 # Gna4H4-Gna5H1     133
204 AG34 H5    205 AGN4 H1      4.0 # increased Gna4H5-Gna5H1 27,19
204 AG34 H61   205 AGN4 H1      3.5 # Gna4H6-Gna5H1     65,41
204 AG34 H61   205 AGN4 H2      5.0 # Gna4H6-Gna5H2     17
#204 AG34 H2    205 AGN4 HN2            # ov. GalNAc4 H2-Glc5' H1
204 AG34 H61   205 AGN4 HN2     5.0 # Gna4H6-Gna5HN         15
204 AG34 H62   205 AGN4 H1      2.8 # dincreased Gna4H6'-Gna5H1    118, 66
204 AG34 H62   205 AGN4 H2      5.0 # Gna4H6'-Gna5H2    11
204 AG34 H62   205 AGN4 Q2      5.0 # 
204 AG34 H62   205 AGN4 HN2     5.0 # Gna4H6'-Gna5HN         24, 18 ov.

204 AG34 H3    300 GLB   H1     2.6 # Gna4H3-GlcH1      163
204 AG34 H4    300 GLB  H1      4.0 # Gna4H4-GlcH1      26 ov. GalNAc4 H2
#204 AG34 H5    300 GLB  H1      5.0 # increased Gna4H5-GlcH1      48ov. GalNAc4 H2
#204 AG34 Q2    300 GLB  H1      5.0 # GlcH1-Gna4QAc     16ov. GalNAc4 H2

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#GalNAc 5   Intra  
205 AGN4 H1    205 AGN4 Q2      5.5 # Gna5H1-QAc       9
205 AGN4 H1    205 AGN4 HN2     4.0 # Gna5H1-HN         20
205 AGN4 H2    205 AGN4 Q2      5.0 # Gna5H2-QAc       10
205 AGN4 H2    205 AGN4 HN2     3.8 # Gna5H2-HN         35
205 AGN4 H3    205 AGN4 HN2     3.0 # Gna5H3-HN         49
205 AGN4 H4    205 AGN4 H61     4.0 # Gna5H6-H4       33,12
205 AGN4 H4    205 AGN4 H62     3.8 # Gna5H6'-H4       28 ov.
205 AGN4 H4    205 AGN4 HN2     5.5 # Gna5H4-HN          9
205 AGN4 H5    205 AGN4 H61     3.5 # Gna5H6-H5        123ov.,47
205 AGN4 H5    205 AGN4 H62     3.5 # Gna5H6'-H5       43,30

#Inter 
205 AGN4 H2    206 AGN4 H3      5.0 #  34 ov.
205 AGN4 H2    206 AGN4 H5      5.0 #  close to diagonal
205 AGN4 H4    206 AGN4 H1      2.6 # Gna6H1-Gna5H4     163
205 AGN4 H5    206 AGN4 H1      4.0 # Gna5H5-Gna6H1     20
205 AGN4 H61   206 AGN4 H1      4.0 # Gna5H6-Gna6H1     29,18
205 AGN4 H61   206 AGN4 Q2      5.0 #13,14
205 AGN4 H61   206 AGN4 HN2     5.0 # Gna5H6-Gna6HN         17
205 AGN4 H62   206 AGN4 H1      3.5 # Gna5H6'-Gna6H1     29
205 AGN4 H62   206 AGN4 Q2      4.0 #21,23
205 AGN4 H62   206 AGN4 HN2     4.0 # Gna5H6'-Gna6HN         24, 16
 
205 AGN4 H5    300 GLB  H2      3.5 # increased Gna5H5-GlcH2      46
205 AGN4 H61   300 GLB  H2      4.0 # Gna5H6-GlcH2      38
205 AGN4 H61   300 GLB  H4      5.0 # Gna5H6-GlcH4      16 weird peak
205 AGN4 H62   300 GLB  H4      5.0 # 16,8
205 AGN4 H62   300 GLB  H2      5.0 # increased Gna5H6'-GlcH2     15,11
#205 AGN4 HN2   300 GLB  H1      5.0 # GlcH1-Gna5HN         11 ov. GalNAc4 H2
 
######################################################################
#GalNAc 6   Intra    
206 AGN4 H1    206 AGN4 Q2      5.5 # Gna6H1-QAc       8
206 AGN4 H1    206 AGN4 HN2     5.5 # Gna6H1-HN         13
206 AGN4 H2    206 AGN4 HN2     4.8 # Gna6H2-HN         16 weird peak
206 AGN4 H3    206 AGN4 HN2     3.5 # Gna6H3-HN         39


######################################################################
#Glc 5'   Intra 
300 GLB H1     300 GLB  H3      2.8 # 58
300 GLB H1     300 GLB  H5      2.8 # 67
300 GLB H4     300 GLB  H61     4.0 # GlcH4-H6         30,31
300 GLB H4     300 GLB  H62     3.8 # GlcH6'-H4        34
300 GLB H5     300 GLB  H61     3.2 # GlcH6-H5         50
300 GLB H5     300 GLB  H62     3.5 # GlcH6'-H5        38

# Protein-Glycan restraints

#Carbohydrate-protein config
 42 ASX  CG    201 BAC3 C1      2.42  1.00E+2
 42 ASX  ND2   201 BAC3 C1      1.42  1.00E+2
 42 ASX  HD21  201 BAC3 C1      1.99  1.00E+2
 42 ASX  ND2   201 BAC3 H1      1.99  1.00E+2
 42 ASX  ND2   201 BAC3 C2      2.40  1.00E+2
 42 ASX  ND2   201 BAC3 O5      2.37  1.00E+2
 42 ASX  OD1   201 BAC3 C1      2.80  1.00E+2 
 42 ASX  CB    201 BAC3 C1      3.74  1.00E+2
  
#NOE restraints intermolecular
# 41 PHE  HA    201 BAC3 Q2      4.0
 41 PHE  HB2   201 BAC3 Q2      4.5  # S/N 21 
 42 ASX  HA    201 BAC3 Q2      4.5  # S/N 24 
 42 ASX  HB2   201 BAC3 H1      5.5
 42 ASX  HB2   201 BAC3 Q2      5.3  # S/N 14 
 42 ASX  HB3   201 BAC3 H1      5.5
 42 ASX  HB3   201 BAC3 Q2      5.3  # S/N 15 
 42 ASX  HB2    42 ASX  HD21    4.6
 42 ASX  HB3    42 ASX  HD21    4.6 
 42 ASX  HD21  201 BAC3 H1      3.0
 42 ASX  HD21  201 BAC3 H2      3.0 

45 LYS  QB    201 BAC3 Q6      5.0 # S/N 12
45 LYS  QD    201 BAC3 Q6      5.0 # S/N 16
45 LYS  QE    201 BAC3 Q6      4.0 # S/N 24
45 LYS  QE    201 BAC3 H5      6.0 # S/N 6

39 LYS  HA    201 BAC3 Q2      4.0 # S/N 25 
39 LYS  QB    201 BAC3 Q2      4.0 # S/N 25 
39 LYS  QG    201 BAC3 Q2      5.0 # S/N 15 
39 LYS  QD    201 BAC3 Q2      4.0 # S/N 23 
39 LYS  QE    201 BAC3 Q2      5.0 # S/N 12 


#either S44 or 

44 SER  QB    201 BAC3 Q6      3.0 # S/N 80
44 SER  QB    201 BAC3 Q2      5.0 # S/N 14  
44 SER  QB    201 BAC3 Q4      6.0 # S/N 7 
44 SER  QB    201 BAC3 H5      3.5 # S/N 45 
44 SER  QB    201 BAC3 H1      3.2 # S/N 64  
44 SER  QB    202 AGN4 H1      6.0 # S/N 6




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