NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id cing stage position program type subtype subsubtype other_prop
13148 1u6p cing 1-original 25 DYANA/DIANA distance general distance simple LOWER_ONLY=true



#----------------------------------------------------------------------
# Begin slCm2 phosphate limit of approach
#----------------------------------------------------------------------
 310 RGUA  P     347 RGUA  P      8.0   0.20E+00
 310 RGUA  P     346 RCYT  P      8.0   0.20E+00

 311 RCYT  P     347 RGUA  P      8.0   0.20E+00
 311 RCYT  P     346 RCYT  P      8.0   0.20E+00
 311 RCYT  P     345 RCYT  P      8.0   0.20E+00

 312 RGUA  P     346 RCYT  P      8.0   0.20E+00
 312 RGUA  P     345 RCYT  P      8.0   0.20E+00
 312 RGUA  P     344 RCYT  P      8.0   0.20E+00

 313 RGUA  P     344 RCYT  P      8.0   0.20E+00

 314 RADE  P     343 RADE  P      8.0   0.20E+00
 314 RADE  P     344 RCYT  P      8.0   0.20E+00

 315 RCYT  P     342 RCYT  P      8.0   0.20E+00
 315 RCYT  P     343 RADE  P      8.0   0.20E+00

 316 RCYT  P     344 RCYT  P      8.0   0.20E+00
 316 RCYT  P     343 RADE  P      8.0   0.20E+00
 316 RCYT  P     342 RCYT  P      8.0   0.20E+00

 317 RCYT  P     341 RADE  P      8.0   0.20E+00
 317 RCYT  P     342 RCYT  P      8.0   0.20E+00

 318 RGUA  P     341 RADE  P      8.0   0.20E+00

 324 RGUA  P     332 RADE  P      8.0   0.20E+00
 324 RGUA  P     333 RADE  P      8.0   0.20E+00
#######################################################################
## End slCm2 Restraints
#######################################################################
#--------------------------------------------------------------------
#
# SLDm mutant RNA- lower limit file for H-bonds
# Created by dhabib2 1/29/02
# Indicate modifications with a comment on the same line as the change
# Modified by adey1 5/7/02
#
#--------------------------------------------------------------------
# SLD mutant
#--------------------------------------------------------------------

#A353-U376
 353 RADE  N1  376 URA H3      1.80  1.00E+00
 353 RADE  N1  376 URA N3      2.90  1.00E+00
 353 RADE  H61 376 URA O4      1.80  1.00E+00
 353 RADE  N6  376 URA O4      2.90  1.00E+00

#A354-U375
 354 RADE  N1  375 URA H3      1.80  1.00E+00
 354 RADE  N1  375 URA N3      2.90  1.00E+00
 354 RADE  H61 375 URA O4      1.80  1.00E+00
 354 RADE  N6  375 URA O4      2.90  1.00E+00


#C355-G374
 355 RCYT N3   374 RGUA H1      1.80  1.00E+00
 355 RCYT N3   374 RGUA N1      2.90  1.00E+00
 355 RCYT O2   374 RGUA H21     1.80  1.00E+00
 355 RCYT O2   374 RGUA N2      2.90  1.00E+00
 355 RCYT H41  374 RGUA O6      1.80  1.00E+00
 355 RCYT N4   374 RGUA O6      2.90  1.00E+00
 
#C356-G373
 356 RCYT N3   373 RGUA H1      1.80  1.00E+00
 356 RCYT N3   373 RGUA N1      2.90  1.00E+00
 356 RCYT O2   373 RGUA H21     1.80  1.00E+00
 356 RCYT O2   373 RGUA N2      2.90  1.00E+00
 356 RCYT H41  373 RGUA O6      1.80  1.00E+00
 356 RCYT N4   373 RGUA O6      2.90  1.00E+00

#C357-G372
 357 RCYT N3   372 RGUA H1      1.80  1.00E+00
 357 RCYT N3   372 RGUA N1      2.90  1.00E+00
 357 RCYT O2   372 RGUA H21     1.80  1.00E+00
 357 RCYT O2   372 RGUA N2      2.90  1.00E+00
 357 RCYT H41  372 RGUA O6      1.80  1.00E+00
 357 RCYT N4   372 RGUA O6      2.90  1.00E+00

#U358-A371
 358 URA  H3   371 RADE N1      1.80  1.00E+00
 358 URA  N3   371 RADE N1      2.90  1.00E+00
 358 URA  O4   371 RADE H61     1.80  1.00E+00
 358 URA  O4   371 RADE N6      2.90  1.00E+00

#G359-C370
 359 RGUA H1   370 RCYT N3      1.80  1.00E+00
 359 RGUA N1   370 RCYT N3      2.90  1.00E+00
 359 RGUA H21  370 RCYT O2      1.80  1.00E+00
 359 RGUA N2   370 RCYT O2      2.90  1.00E+00
 359 RGUA O6   370 RCYT H41     1.80  1.00E+00
 359 RGUA O6   370 RCYT N4      2.90  1.00E+00

#G360-C369
 360 RGUA H1   369 RCYT N3      1.80  1.00E+00
 360 RGUA N1   369 RCYT N3      2.90  1.00E+00
 360 RGUA H21  369 RCYT O2      1.80  1.00E+00
 360 RGUA N2   369 RCYT O2      2.90  1.00E+00
 360 RGUA O6   369 RCYT H41     1.80  1.00E+00
 360 RGUA O6   369 RCYT N4      2.90  1.00E+00

#G361-C368
 361 RGUA H1   368 RCYT N3      1.80  1.00E+00
 361 RGUA N1   368 RCYT N3      2.90  1.00E+00
 361 RGUA H21  368 RCYT O2      1.80  1.00E+00
 361 RGUA N2   368 RCYT O2      2.90  1.00E+00
 361 RGUA O6   368 RCYT H41     1.80  1.00E+00
 361 RGUA O6   368 RCYT N4      2.90  1.00E+00

#A362-U367
 362 RADE  N1  367 URA H3      1.80  1.00E+00
 362 RADE  N1  367 URA N3      2.90  1.00E+00
 362 RADE  H61 367 URA O4      1.80  1.00E+00
 362 RADE  N6  367 URA O4      2.90  1.00E+00

#--------------------------------------------------------------------
# SLD-mutant Loop
#--------------------------------------------------------------------

#G363
#A364
#G365
#G366

#--------------------------------------------------------------------
#----------------------------------------------------------------------
# Begin slDm phosphate limit of approach
#----------------------------------------------------------------------
 353    RADE    P       371     RADE    P       8.0     0.20E+00
 353    RADE    P       370     RCYT    P       8.0     0.20E+00
 353    RADE    P       369     RCYT    P       8.0     0.20E+00

 354    RADE    P       370     RCYT    P       8.0     0.20E+00
 354    RADE    P       369     RCYT    P       8.0     0.20E+00
 354    RADE    P       368     RCYT    P       8.0     0.20E+00

 355    RCYT    P       369     RCYT    P       8.0     0.20E+00
 355    RCYT    P       368     RCYT    P       8.0     0.20E+00
 355    RCYT    P       367     URA     P       8.0     0.20E+00

 356    RCYT    P       368     RCYT    P       8.0     0.20E+00
 356    RCYT    P       367     URA     P       8.0     0.20E+00
 356    RCYT    P       366     RGUA    P       8.0     0.20E+00
#######################################################################
## End slDm Restraints
#######################################################################
### Phosphate separation restraints
 371    RADE    P       352     RCYT    P       8.0     0.20E+00

 372    RGUA    P       352     RCYT    P       8.0     0.20E+00
 372    RGUA    P       351     RGUA    P       8.0     0.20E+00

 373    RGUA    P       351     RGUA    P       8.0     0.20E+00
 373    RGUA    P       350     RCYT    P       8.0     0.20E+00

 374    RGUA    P       350     RCYT    P       8.0     0.20E+00
 374    RGUA    P       349     RCYT    P       8.0     0.20E+00

 375    URA     P       349     RCYT    P       8.0     0.20E+00
 375    URA     P       348     RGUA    P       8.0     0.20E+00

 376    URA     P       348     RGUA    P       8.0     0.20E+00
 376    URA     P       347     RGUA    P       8.0     0.20E+00


Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Saturday, May 4, 2024 8:14:31 AM GMT (wattos1)