NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
648521 |
6rwg   |
34409 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_6rwg
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 10
_NOE_completeness_stats.Residue_count 159
_NOE_completeness_stats.Total_atom_count 2435
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 864
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 48.4
_NOE_completeness_stats.Constraint_unexpanded_count 1773
_NOE_completeness_stats.Constraint_count 1773
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1403
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 441
_NOE_completeness_stats.Constraint_surplus_count 48
_NOE_completeness_stats.Constraint_observed_count 1284
_NOE_completeness_stats.Constraint_expected_count 1369
_NOE_completeness_stats.Constraint_matched_count 663
_NOE_completeness_stats.Constraint_unmatched_count 621
_NOE_completeness_stats.Constraint_exp_nonobs_count 706
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 669 700 503 71.9 1.0 .
medium-range 514 423 132 31.2 -0.2 .
long-range 101 246 28 11.4 -0.8 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 2 0 0 0 0 0 0 0 0 0 . 0 0.0 0.0
shell 2.00 2.50 113 76 2 1 7 23 21 14 6 2 . 0 67.3 66.1
shell 2.50 3.00 217 127 0 3 9 27 39 27 7 8 . 7 58.5 61.1
shell 3.00 3.50 385 205 0 0 7 32 38 54 31 17 . 26 53.2 56.9
shell 3.50 4.00 652 255 0 0 2 21 48 65 52 38 . 29 39.1 48.4
shell 4.00 4.50 971 278 0 0 0 1 35 67 72 46 . 57 28.6 40.2
shell 4.50 5.00 1540 178 0 0 0 0 0 32 45 57 . 44 11.6 28.8
shell 5.00 5.50 2003 114 0 0 0 0 1 3 26 35 . 49 5.7 21.0
shell 5.50 6.00 2217 40 0 0 0 0 0 3 2 8 . 27 1.8 15.7
shell 6.00 6.50 2405 7 0 0 0 0 0 0 0 0 . 7 0.3 12.2
shell 6.50 7.00 2618 3 0 0 0 0 0 0 0 0 . 3 0.1 9.8
shell 7.00 7.50 2767 1 0 0 0 0 0 0 0 0 . 1 0.0 8.1
shell 7.50 8.00 3025 0 0 0 0 0 0 0 0 0 . 0 0.0 6.8
shell 8.00 8.50 3240 0 0 0 0 0 0 0 0 0 . 0 0.0 5.8
shell 8.50 9.00 3349 0 0 0 0 0 0 0 0 0 . 0 0.0 5.0
sums . . 25504 1284 2 4 25 104 182 265 241 211 . 250 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 0 4 0 0.0 -2.5 >sigma
1 2 TYR 6 0 8 0 0.0 -2.5 >sigma
1 3 SER 4 0 8 0 0.0 -2.5 >sigma
1 4 PRO 5 4 13 3 23.1 -1.4 >sigma
1 5 THR 4 11 17 7 41.2 -0.6 .
1 6 SER 4 13 13 7 53.8 0.0 .
1 7 ILE 6 11 19 6 31.6 -1.0 >sigma
1 8 LEU 7 18 20 9 45.0 -0.4 .
1 9 ASP 4 17 15 11 73.3 0.9 .
1 10 ILE 6 25 38 9 23.7 -1.4 >sigma
1 11 ARG 7 13 15 5 33.3 -0.9 .
1 12 GLN 7 24 32 11 34.4 -0.9 .
1 13 GLY 3 14 13 9 69.2 0.7 .
1 14 PRO 5 6 13 3 23.1 -1.4 >sigma
1 15 LYS 7 13 12 8 66.7 0.6 .
1 16 GLU 5 25 31 11 35.5 -0.8 .
1 17 PRO 5 5 22 4 18.2 -1.6 >sigma
1 18 PHE 7 25 51 14 27.5 -1.2 >sigma
1 19 ARG 7 27 23 12 52.2 -0.1 .
1 20 ASP 4 30 22 12 54.5 0.1 .
1 21 TYR 6 29 36 12 33.3 -0.9 .
1 22 VAL 5 35 39 13 33.3 -0.9 .
1 23 ASP 4 27 19 13 68.4 0.7 .
1 24 ARG 7 27 31 14 45.2 -0.4 .
1 25 PHE 7 37 59 16 27.1 -1.2 >sigma
1 26 TYR 6 27 31 15 48.4 -0.2 .
1 27 LYS 7 23 23 13 56.5 0.1 .
1 28 THR 4 26 20 10 50.0 -0.2 .
1 29 LEU 7 26 31 11 35.5 -0.8 .
1 30 ARG 7 20 16 9 56.3 0.1 .
1 31 ALA 3 15 15 10 66.7 0.6 .
1 32 GLU 5 13 14 8 57.1 0.2 .
1 33 GLN 7 9 9 7 77.8 1.1 >sigma
1 34 ALA 3 10 8 7 87.5 1.6 >sigma
1 35 SER 4 14 14 6 42.9 -0.5 .
1 36 GLN 7 14 13 9 69.2 0.7 .
1 37 GLU 5 16 18 11 61.1 0.4 .
1 38 VAL 5 26 25 11 44.0 -0.4 .
1 39 LYS 7 30 31 14 45.2 -0.4 .
1 40 ASN 6 28 14 12 85.7 1.5 >sigma
1 41 ALA 3 17 14 9 64.3 0.5 .
1 42 ALA 3 23 22 9 40.9 -0.6 .
1 43 THR 4 29 25 11 44.0 -0.4 .
1 44 GLU 5 19 12 10 83.3 1.4 >sigma
1 45 THR 4 23 15 11 73.3 0.9 .
1 46 LEU 7 27 39 13 33.3 -0.9 .
1 47 LEU 7 25 32 11 34.4 -0.9 .
1 48 VAL 5 24 18 10 55.6 0.1 .
1 49 GLN 7 25 20 12 60.0 0.3 .
1 50 ASN 6 23 27 9 33.3 -0.9 .
1 51 ALA 3 21 27 10 37.0 -0.8 .
1 52 ASN 6 23 30 8 26.7 -1.2 >sigma
1 53 PRO 5 8 18 4 22.2 -1.5 >sigma
1 54 ASP 4 20 21 10 47.6 -0.3 .
1 55 CYS 4 27 26 11 42.3 -0.5 .
1 56 LYS 7 29 34 11 32.4 -1.0 .
1 57 THR 4 30 22 12 54.5 0.1 .
1 58 ILE 6 28 41 12 29.3 -1.1 >sigma
1 59 LEU 7 30 43 12 27.9 -1.2 >sigma
1 60 LYS 7 21 14 8 57.1 0.2 .
1 61 ALA 3 23 19 10 52.6 -0.0 .
1 62 LEU 7 26 33 9 27.3 -1.2 >sigma
1 63 GLY 3 14 9 6 66.7 0.6 .
1 64 PRO 5 10 11 6 54.5 0.1 .
1 65 GLY 3 10 8 7 87.5 1.6 >sigma
1 66 ALA 3 18 28 9 32.1 -1.0 .
1 67 THR 4 16 15 11 73.3 0.9 .
1 68 LEU 7 23 28 13 46.4 -0.3 .
1 69 GLU 5 19 25 14 56.0 0.1 .
1 70 GLU 5 30 30 17 56.7 0.2 .
1 71 MET 6 31 38 14 36.8 -0.8 .
1 72 MET 6 31 42 14 33.3 -0.9 .
1 73 THR 4 27 21 12 57.1 0.2 .
1 74 ALA 3 24 20 9 45.0 -0.4 .
1 75 CYS 4 25 24 10 41.7 -0.5 .
1 76 GLN 7 27 31 11 35.5 -0.8 .
1 77 GLY 3 10 7 5 71.4 0.8 .
1 78 VAL 5 18 22 8 36.4 -0.8 .
1 79 GLY 3 9 7 6 85.7 1.5 >sigma
1 80 GLY 3 10 8 4 50.0 -0.2 .
1 81 PRO 5 4 7 3 42.9 -0.5 .
1 82 GLY 3 6 7 5 71.4 0.8 .
1 83 HIS 6 7 6 4 66.7 0.6 .
1 84 LYS 7 8 12 6 50.0 -0.2 .
1 85 ALA 3 13 18 8 44.4 -0.4 .
1 86 ARG 7 12 12 9 75.0 1.0 >sigma
1 87 VAL 5 19 17 11 64.7 0.5 .
1 88 LEU 7 24 21 13 61.9 0.4 .
1 89 ALA 3 19 18 10 55.6 0.1 .
1 90 GLU 5 17 16 12 75.0 1.0 >sigma
1 91 ALA 3 19 15 10 66.7 0.6 .
1 92 MET 6 16 18 11 61.1 0.4 .
1 93 SER 4 17 11 8 72.7 0.9 .
1 94 GLN 7 17 16 12 75.0 1.0 >sigma
1 95 VAL 5 18 14 11 78.6 1.2 >sigma
1 96 THR 4 12 12 10 83.3 1.4 >sigma
1 97 ASN 6 12 14 7 50.0 -0.2 .
1 98 PRO 5 8 14 6 42.9 -0.5 .
1 99 ALA 3 17 16 10 62.5 0.4 .
1 100 THR 4 17 16 10 62.5 0.4 .
1 101 ILE 6 17 19 11 57.9 0.2 .
1 102 MET 6 16 17 11 64.7 0.5 .
1 103 ILE 6 14 17 10 58.8 0.3 .
1 104 GLN 7 9 18 9 50.0 -0.2 .
1 105 LYS 7 5 16 4 25.0 -1.3 >sigma
1 106 GLY 3 3 12 3 25.0 -1.3 >sigma
1 107 ASN 6 3 9 3 33.3 -0.9 .
1 108 PHE 7 5 12 5 41.7 -0.5 .
1 109 ARG 7 6 13 6 46.2 -0.3 .
1 110 ASN 6 2 10 2 20.0 -1.6 >sigma
1 111 GLN 7 0 9 0 0.0 -2.5 >sigma
1 112 ARG 7 1 11 1 9.1 -2.1 >sigma
1 113 LYS 7 2 9 2 22.2 -1.5 >sigma
1 114 THR 4 5 9 5 55.6 0.1 .
1 115 VAL 5 10 14 8 57.1 0.2 .
1 116 LYS 7 11 14 7 50.0 -0.2 .
1 117 CYS 4 24 19 10 52.6 -0.0 .
1 118 PHE 7 17 8 6 75.0 1.0 >sigma
1 119 ASN 6 21 20 10 50.0 -0.2 .
1 120 CYS 4 17 11 8 72.7 0.9 .
1 121 GLY 3 16 8 8 100.0 2.2 >sigma
1 122 LYS 7 12 13 8 61.5 0.4 .
1 123 GLU 5 18 12 9 75.0 1.0 >sigma
1 124 GLY 3 9 9 8 88.9 1.7 >sigma
1 125 HIS 6 18 13 9 69.2 0.7 .
1 126 ILE 6 24 27 11 40.7 -0.6 .
1 127 ALA 3 21 23 12 52.2 -0.1 .
1 128 LYS 7 19 18 12 66.7 0.6 .
1 129 ASN 6 20 18 10 55.6 0.1 .
1 130 CYS 4 14 13 6 46.2 -0.3 .
1 131 ARG 7 6 5 3 60.0 0.3 .
1 132 ALA 3 13 13 4 30.8 -1.1 >sigma
1 133 PRO 5 3 4 1 25.0 -1.3 >sigma
1 134 ARG 7 9 7 6 85.7 1.5 >sigma
1 135 LYS 7 20 10 9 90.0 1.7 >sigma
1 136 LYS 7 12 10 9 90.0 1.7 >sigma
1 137 GLY 3 14 7 7 100.0 2.2 >sigma
1 138 CYS 4 20 15 11 73.3 0.9 .
1 139 TRP 10 26 8 7 87.5 1.6 >sigma
1 140 LYS 7 18 12 11 91.7 1.8 >sigma
1 141 CYS 4 16 10 7 70.0 0.8 .
1 142 GLY 3 18 9 8 88.9 1.7 >sigma
1 143 LYS 7 16 12 11 91.7 1.8 >sigma
1 144 GLU 5 6 10 6 60.0 0.3 .
1 145 GLY 3 6 8 5 62.5 0.4 .
1 146 HIS 6 7 9 6 66.7 0.6 .
1 147 GLN 7 14 13 8 61.5 0.4 .
1 148 MET 6 19 17 9 52.9 -0.0 .
1 149 LYS 7 16 15 12 80.0 1.2 >sigma
1 150 ASP 4 19 13 10 76.9 1.1 >sigma
1 151 CYS 4 14 12 7 58.3 0.2 .
1 152 THR 4 7 4 3 75.0 1.0 >sigma
1 153 GLU 5 9 6 5 83.3 1.4 >sigma
1 154 ARG 7 6 7 4 57.1 0.2 .
1 155 GLN 7 2 9 2 22.2 -1.5 >sigma
1 156 ALA 3 3 8 3 37.5 -0.7 .
1 157 ASN 6 2 3 2 66.7 0.6 .
stop_
save_
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