NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
549970 |
2lj8   |
17374 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2lj8
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 144
_NOE_completeness_stats.Total_atom_count 2107
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 737
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 40.3
_NOE_completeness_stats.Constraint_unexpanded_count 1546
_NOE_completeness_stats.Constraint_count 1546
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1570
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 167
_NOE_completeness_stats.Constraint_surplus_count 17
_NOE_completeness_stats.Constraint_observed_count 1362
_NOE_completeness_stats.Constraint_expected_count 1559
_NOE_completeness_stats.Constraint_matched_count 628
_NOE_completeness_stats.Constraint_unmatched_count 734
_NOE_completeness_stats.Constraint_exp_nonobs_count 931
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 497 589 328 55.7 1.0 >sigma
medium-range 376 320 106 33.1 -0.4 .
long-range 489 650 194 29.8 -0.6 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 11 5 0 0 0 1 0 0 2 2 . 0 45.5 45.5
shell 2.00 2.50 155 99 0 0 0 74 0 6 5 6 . 8 63.9 62.7
shell 2.50 3.00 273 149 0 0 6 65 0 28 17 13 . 20 54.6 57.6
shell 3.00 3.50 395 156 0 0 2 39 2 40 33 19 . 21 39.5 49.0
shell 3.50 4.00 725 219 0 0 0 30 3 57 47 17 . 65 30.2 40.3
shell 4.00 4.50 1188 269 0 0 0 0 0 20 110 33 . 106 22.6 32.7
shell 4.50 5.00 1638 202 0 0 0 0 0 2 25 56 . 119 12.3 25.1
shell 5.00 5.50 2026 130 0 0 0 0 0 0 0 24 . 106 6.4 19.2
shell 5.50 6.00 2446 68 0 0 0 0 0 0 0 2 . 66 2.8 14.6
shell 6.00 6.50 2706 53 0 0 0 0 0 0 0 0 . 53 2.0 11.7
shell 6.50 7.00 2897 11 0 0 0 0 0 0 0 0 . 11 0.4 9.4
shell 7.00 7.50 3109 1 0 0 0 0 0 0 0 0 . 1 0.0 7.8
shell 7.50 8.00 3542 0 0 0 0 0 0 0 0 0 . 0 0.0 6.5
shell 8.00 8.50 3786 0 0 0 0 0 0 0 0 0 . 0 0.0 5.5
shell 8.50 9.00 3995 0 0 0 0 0 0 0 0 0 . 0 0.0 4.7
sums . . 28892 1362 0 0 8 209 5 153 239 172 . 576 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 9 MET 6 3 5 3 60.0 1.0 .
1 10 ALA 3 6 9 5 55.6 0.7 .
1 11 MET 6 4 9 4 44.4 0.1 .
1 12 SER 4 4 9 4 44.4 0.1 .
1 13 GLY 3 7 10 4 40.0 -0.2 .
1 14 VAL 5 34 41 16 39.0 -0.3 .
1 15 SER 4 16 13 9 69.2 1.5 >sigma
1 16 VAL 5 45 43 24 55.8 0.7 .
1 17 ALA 3 34 21 15 71.4 1.7 >sigma
1 18 ASP 4 11 10 7 70.0 1.6 >sigma
1 19 GLU 5 23 21 12 57.1 0.8 .
1 20 CYS 4 26 26 15 57.7 0.9 .
1 21 VAL 5 38 35 18 51.4 0.5 .
1 22 THR 4 18 19 11 57.9 0.9 .
1 23 ALA 3 32 20 14 70.0 1.6 >sigma
1 24 LEU 7 33 42 18 42.9 -0.0 .
1 25 ASN 6 12 18 5 27.8 -0.9 .
1 26 ASP 4 15 26 7 26.9 -1.0 .
1 27 LEU 7 59 64 27 42.2 -0.1 .
1 28 ARG 7 23 26 12 46.2 0.2 .
1 29 HIS 6 15 14 9 64.3 1.3 >sigma
1 30 LYS 7 14 10 7 70.0 1.6 >sigma
1 31 LYS 7 21 30 8 26.7 -1.0 >sigma
1 32 SER 4 26 25 11 44.0 0.0 .
1 33 ARG 7 18 33 10 30.3 -0.8 .
1 34 TYR 6 28 46 14 30.4 -0.8 .
1 35 VAL 5 39 49 19 38.8 -0.3 .
1 36 ILE 6 47 48 20 41.7 -0.1 .
1 37 MET 6 35 32 12 37.5 -0.4 .
1 38 HIS 6 15 28 8 28.6 -0.9 .
1 39 ILE 6 43 64 19 29.7 -0.8 .
1 40 VAL 5 31 23 15 65.2 1.3 >sigma
1 41 ASP 4 18 14 9 64.3 1.3 >sigma
1 42 GLN 7 22 21 10 47.6 0.3 .
1 43 LYS 7 22 20 12 60.0 1.0 .
1 44 SER 4 38 14 10 71.4 1.7 >sigma
1 45 ILE 6 52 63 29 46.0 0.2 .
1 46 ALA 3 34 18 14 77.8 2.1 >sigma
1 47 VAL 5 23 21 8 38.1 -0.3 .
1 48 LYS 7 16 21 8 38.1 -0.3 .
1 49 THR 4 36 20 16 80.0 2.2 >sigma
1 50 ILE 6 25 30 11 36.7 -0.4 .
1 51 GLY 3 17 18 8 44.4 0.1 .
1 52 GLU 5 20 22 11 50.0 0.4 .
1 53 ARG 7 9 20 6 30.0 -0.8 .
1 54 GLY 3 8 9 6 66.7 1.4 >sigma
1 55 ALA 3 18 18 7 38.9 -0.3 .
1 56 ASN 6 15 14 8 57.1 0.8 .
1 57 PHE 7 14 14 7 50.0 0.4 .
1 58 ASP 4 14 15 9 60.0 1.0 .
1 59 GLN 7 17 22 9 40.9 -0.2 .
1 60 PHE 7 21 36 12 33.3 -0.6 .
1 61 ILE 6 26 23 9 39.1 -0.3 .
1 62 GLU 5 14 14 6 42.9 -0.0 .
1 63 ALA 3 25 15 12 80.0 2.2 >sigma
1 64 ILE 6 28 26 12 46.2 0.2 .
1 65 ASP 4 13 10 5 50.0 0.4 .
1 66 LYS 7 8 17 2 11.8 -1.9 >sigma
1 67 ASN 6 14 15 5 33.3 -0.6 .
1 68 VAL 5 19 18 6 33.3 -0.6 .
1 69 PRO 5 11 39 5 12.8 -1.8 >sigma
1 70 CYS 4 14 15 7 46.7 0.2 .
1 71 TYR 6 22 41 11 26.8 -1.0 .
1 72 ALA 3 19 25 12 48.0 0.3 .
1 73 ALA 3 24 27 10 37.0 -0.4 .
1 74 PHE 7 19 25 8 32.0 -0.7 .
1 75 ASP 4 24 27 10 37.0 -0.4 .
1 76 PHE 7 27 14 8 57.1 0.8 .
1 77 GLU 5 6 12 4 33.3 -0.6 .
1 78 TYR 6 10 19 5 26.3 -1.0 >sigma
1 79 THR 4 8 18 5 27.8 -0.9 .
1 80 THR 4 7 17 3 17.6 -1.5 >sigma
1 81 ASN 6 2 19 1 5.3 -2.3 >sigma
1 82 ASP 4 6 13 4 30.8 -0.8 .
1 83 GLY 3 9 13 5 38.5 -0.3 .
1 84 PRO 5 5 5 2 40.0 -0.2 .
1 85 ARG 7 16 19 6 31.6 -0.7 .
1 86 ASP 4 14 13 6 46.2 0.2 .
1 87 LYS 7 24 22 9 40.9 -0.2 .
1 88 LEU 7 28 46 12 26.1 -1.0 >sigma
1 89 ILE 6 45 43 16 37.2 -0.4 .
1 90 LEU 7 28 45 12 26.7 -1.0 >sigma
1 91 ILE 6 37 39 14 35.9 -0.5 .
1 92 SER 4 17 20 8 40.0 -0.2 .
1 93 TRP 10 19 12 7 58.3 0.9 .
1 94 ASN 6 13 12 2 16.7 -1.6 >sigma
1 95 PRO 5 10 41 6 14.6 -1.7 >sigma
1 96 ASP 4 13 11 7 63.6 1.2 >sigma
1 97 SER 4 9 8 7 87.5 2.6 >sigma
1 98 GLY 3 16 15 8 53.3 0.6 .
1 99 ALA 3 16 18 7 38.9 -0.3 .
1 100 PRO 5 5 14 3 21.4 -1.3 >sigma
1 101 ARG 7 15 24 8 33.3 -0.6 .
1 102 THR 4 28 28 13 46.4 0.2 .
1 103 LYS 7 24 20 9 45.0 0.1 .
1 104 MET 6 21 15 9 60.0 1.0 .
1 105 LEU 7 34 53 15 28.3 -0.9 .
1 106 TYR 6 20 29 10 34.5 -0.5 .
1 107 SER 4 15 18 8 44.4 0.1 .
1 108 SER 4 18 13 7 53.8 0.6 .
1 109 SER 4 23 27 16 59.3 1.0 .
1 110 ARG 7 21 27 10 37.0 -0.4 .
1 111 ASP 4 20 15 9 60.0 1.0 .
1 112 ALA 3 26 20 11 55.0 0.7 .
1 113 LEU 7 54 50 19 38.0 -0.3 .
1 114 VAL 5 34 21 11 52.4 0.5 .
1 115 PRO 5 14 24 6 25.0 -1.1 >sigma
1 116 LEU 7 43 45 22 48.9 0.3 .
1 117 THR 4 28 27 12 44.4 0.1 .
1 118 GLN 7 15 8 6 75.0 1.9 >sigma
1 119 GLY 3 7 6 6 100.0 3.4 >sigma
1 120 PHE 7 17 25 7 28.0 -0.9 .
1 121 GLN 7 19 24 10 41.7 -0.1 .
1 122 GLY 3 10 13 7 53.8 0.6 .
1 123 ILE 6 32 35 12 34.3 -0.5 .
1 124 GLN 7 18 17 7 41.2 -0.1 .
1 125 ALA 3 21 15 8 53.3 0.6 .
1 126 ASN 6 9 24 3 12.5 -1.9 >sigma
1 127 ASP 4 5 14 1 7.1 -2.2 >sigma
1 128 ALA 3 13 14 7 50.0 0.4 .
1 129 SER 4 11 15 6 40.0 -0.2 .
1 130 GLY 3 14 17 9 52.9 0.6 .
1 131 LEU 7 36 22 10 45.5 0.1 .
1 132 ASP 4 21 15 7 46.7 0.2 .
1 133 PHE 7 9 10 4 40.0 -0.2 .
1 134 GLU 5 14 15 8 53.3 0.6 .
1 135 GLU 5 16 25 7 28.0 -0.9 .
1 136 ILE 6 25 36 9 25.0 -1.1 >sigma
1 137 SER 4 11 16 5 31.3 -0.7 .
1 138 ARG 7 7 21 5 23.8 -1.2 >sigma
1 139 LYS 7 13 45 10 22.2 -1.3 >sigma
1 140 VAL 5 30 39 10 25.6 -1.1 >sigma
1 141 LYS 7 8 19 6 31.6 -0.7 .
1 142 SER 4 9 15 7 46.7 0.2 .
1 143 ASN 6 6 9 4 44.4 0.1 .
1 144 ARG 7 6 4 1 25.0 -1.1 >sigma
stop_
save_
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