NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
518510 |
2leq   |
17723 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2leq
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 10
_NOE_completeness_stats.Residue_count 146
_NOE_completeness_stats.Total_atom_count 2375
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 831
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 49.3
_NOE_completeness_stats.Constraint_unexpanded_count 2532
_NOE_completeness_stats.Constraint_count 2532
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1833
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 325
_NOE_completeness_stats.Constraint_surplus_count 89
_NOE_completeness_stats.Constraint_observed_count 2118
_NOE_completeness_stats.Constraint_expected_count 1763
_NOE_completeness_stats.Constraint_matched_count 870
_NOE_completeness_stats.Constraint_unmatched_count 1248
_NOE_completeness_stats.Constraint_exp_nonobs_count 893
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 736 623 356 57.1 1.0 >sigma
medium-range 501 398 186 46.7 -0.3 .
long-range 881 742 328 44.2 -0.7 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 6 4 0 0 1 1 0 2 0 0 . 0 66.7 66.7
shell 2.00 2.50 146 116 0 0 31 56 13 5 5 4 . 2 79.5 78.9
shell 2.50 3.00 336 212 0 0 10 68 62 41 23 6 . 2 63.1 68.0
shell 3.00 3.50 458 233 0 0 2 29 63 66 44 23 . 6 50.9 59.7
shell 3.50 4.00 817 305 0 0 1 16 62 121 69 28 . 8 37.3 49.3
shell 4.00 4.50 1290 415 0 0 0 3 37 128 149 73 . 25 32.2 42.1
shell 4.50 5.00 1799 384 0 0 0 0 4 64 151 104 . 61 21.3 34.4
shell 5.00 5.50 2303 292 0 0 0 0 0 6 70 117 . 99 12.7 27.4
shell 5.50 6.00 2673 131 0 0 0 0 0 1 11 53 . 66 4.9 21.3
shell 6.00 6.50 2759 22 0 0 0 0 0 0 1 4 . 17 0.8 16.8
shell 6.50 7.00 3028 4 0 0 0 0 0 0 0 3 . 1 0.1 13.6
shell 7.00 7.50 3193 0 0 0 0 0 0 0 0 0 . 0 0.0 11.3
shell 7.50 8.00 3612 0 0 0 0 0 0 0 0 0 . 0 0.0 9.4
shell 8.00 8.50 3760 0 0 0 0 0 0 0 0 0 . 0 0.0 8.1
shell 8.50 9.00 4047 0 0 0 0 0 0 0 0 0 . 0 0.0 7.0
sums . . 30227 2118 0 0 45 173 241 434 523 415 . 287 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 0 3 0 0.0 -3.2 >sigma
1 2 GLU 5 4 12 4 33.3 -1.1 >sigma
1 3 ILE 6 15 18 9 50.0 -0.0 .
1 4 LYS 7 25 21 14 66.7 1.1 >sigma
1 5 LEU 7 48 31 19 61.3 0.7 .
1 6 ILE 6 42 29 16 55.2 0.3 .
1 7 ALA 3 49 36 23 63.9 0.9 .
1 8 GLN 7 31 13 11 84.6 2.2 >sigma
1 9 VAL 5 50 35 24 68.6 1.2 >sigma
1 10 LYS 7 27 24 13 54.2 0.3 .
1 11 THR 4 27 23 12 52.2 0.1 .
1 12 VAL 5 21 9 6 66.7 1.1 >sigma
1 13 ILE 6 33 41 12 29.3 -1.3 >sigma
1 14 ASN 6 18 8 5 62.5 0.8 .
1 15 ALA 3 13 18 5 27.8 -1.4 >sigma
1 16 PRO 5 15 23 8 34.8 -1.0 .
1 17 ILE 6 55 57 29 50.9 0.1 .
1 18 GLU 5 29 22 15 68.2 1.2 >sigma
1 19 LYS 7 25 27 8 29.6 -1.3 >sigma
1 20 VAL 5 25 40 11 27.5 -1.5 >sigma
1 21 TRP 10 70 66 26 39.4 -0.7 .
1 22 GLU 5 32 26 13 50.0 -0.0 .
1 23 ALA 3 36 27 12 44.4 -0.4 .
1 24 LEU 7 18 36 6 16.7 -2.2 >sigma
1 25 VAL 5 47 33 14 42.4 -0.5 .
1 26 ASN 6 50 38 21 55.3 0.3 .
1 27 PRO 5 43 34 22 64.7 0.9 .
1 28 GLU 5 17 26 10 38.5 -0.8 .
1 29 ILE 6 58 43 21 48.8 -0.1 .
1 30 ILE 6 42 38 17 44.7 -0.3 .
1 31 LYS 7 45 32 15 46.9 -0.2 .
1 32 GLU 5 29 18 12 66.7 1.1 >sigma
1 33 TYR 6 41 23 13 56.5 0.4 .
1 34 MET 6 38 25 15 60.0 0.6 .
1 35 PHE 7 11 8 6 75.0 1.6 >sigma
1 36 GLY 3 19 13 6 46.2 -0.3 .
1 37 THR 4 32 27 17 63.0 0.8 .
1 38 THR 4 15 14 6 42.9 -0.5 .
1 39 VAL 5 49 37 15 40.5 -0.6 .
1 40 VAL 5 17 15 6 40.0 -0.7 .
1 41 SER 4 30 21 12 57.1 0.5 .
1 42 ASP 4 18 19 7 36.8 -0.9 .
1 43 TRP 10 34 32 17 53.1 0.2 .
1 44 LYS 7 32 25 13 52.0 0.1 .
1 45 GLU 5 23 25 12 48.0 -0.1 .
1 46 GLY 3 15 14 9 64.3 0.9 .
1 47 SER 4 37 29 17 58.6 0.6 .
1 48 GLN 7 29 16 9 56.3 0.4 .
1 49 ILE 6 27 26 7 26.9 -1.5 >sigma
1 50 VAL 5 27 17 10 58.8 0.6 .
1 51 TRP 10 45 34 17 50.0 -0.0 .
1 52 LYS 7 23 14 7 50.0 -0.0 .
1 53 GLY 3 18 7 5 71.4 1.4 >sigma
1 54 GLU 5 28 16 11 68.8 1.2 >sigma
1 55 TRP 10 36 29 16 55.2 0.3 .
1 56 LYS 7 23 11 8 72.7 1.5 >sigma
1 57 GLY 3 15 9 6 66.7 1.1 >sigma
1 58 LYS 7 18 9 6 66.7 1.1 >sigma
1 59 ALA 3 17 10 6 60.0 0.6 .
1 60 TYR 6 42 34 23 67.6 1.1 >sigma
1 61 GLU 5 27 14 9 64.3 0.9 .
1 62 ASP 4 28 20 9 45.0 -0.3 .
1 63 LYS 7 23 14 9 64.3 0.9 .
1 64 GLY 3 19 13 6 46.2 -0.3 .
1 65 THR 4 27 24 13 54.2 0.3 .
1 66 ILE 6 86 57 39 68.4 1.2 >sigma
1 67 LEU 7 21 21 8 38.1 -0.8 .
1 68 GLN 7 27 16 11 68.8 1.2 >sigma
1 69 PHE 7 49 51 27 52.9 0.2 .
1 70 ASN 6 19 19 8 42.1 -0.5 .
1 71 GLU 5 10 17 5 29.4 -1.3 >sigma
1 72 ARG 7 19 24 6 25.0 -1.6 >sigma
1 73 SER 4 26 16 7 43.8 -0.4 .
1 74 ILE 6 39 34 16 47.1 -0.2 .
1 75 LEU 7 46 45 19 42.2 -0.5 .
1 76 GLN 7 28 29 11 37.9 -0.8 .
1 77 TYR 6 69 43 31 72.1 1.4 >sigma
1 78 SER 4 37 24 18 75.0 1.6 >sigma
1 79 HIS 6 36 21 15 71.4 1.4 >sigma
1 80 PHE 7 24 26 6 23.1 -1.8 >sigma
1 81 SER 4 22 13 9 69.2 1.2 >sigma
1 82 PRO 5 23 26 13 50.0 -0.0 .
1 83 LEU 7 42 26 20 76.9 1.7 >sigma
1 84 THR 4 18 17 10 58.8 0.6 .
1 85 GLY 3 8 9 3 33.3 -1.1 >sigma
1 86 LYS 7 5 15 2 13.3 -2.4 >sigma
1 87 PRO 5 4 7 2 28.6 -1.4 >sigma
1 88 ASP 4 10 4 3 75.0 1.6 >sigma
1 89 LEU 7 21 15 7 46.7 -0.2 .
1 90 PRO 5 12 17 6 35.3 -1.0 .
1 91 GLU 5 14 12 5 41.7 -0.5 .
1 92 ASN 6 22 20 11 55.0 0.3 .
1 93 TYR 6 43 33 19 57.6 0.5 .
1 94 HIS 6 41 26 14 53.8 0.2 .
1 95 VAL 5 28 18 10 55.6 0.4 .
1 96 VAL 5 58 37 27 73.0 1.5 >sigma
1 97 THR 4 27 24 7 29.2 -1.4 >sigma
1 98 ILE 6 46 43 17 39.5 -0.7 .
1 99 THR 4 30 18 10 55.6 0.4 .
1 100 LEU 7 44 43 12 27.9 -1.4 >sigma
1 101 THR 4 24 14 9 64.3 0.9 .
1 102 ALA 3 35 21 16 76.2 1.7 >sigma
1 103 LEU 7 27 25 12 48.0 -0.1 .
1 104 LYS 7 5 9 3 33.3 -1.1 >sigma
1 105 LYS 7 6 12 5 41.7 -0.5 .
1 106 GLY 3 16 15 7 46.7 -0.2 .
1 107 VAL 5 40 43 15 34.9 -1.0 .
1 108 GLU 5 23 19 8 42.1 -0.5 .
1 109 VAL 5 26 35 9 25.7 -1.6 >sigma
1 110 GLU 5 29 26 12 46.2 -0.3 .
1 111 LEU 7 69 49 27 55.1 0.3 .
1 112 THR 4 42 22 14 63.6 0.9 .
1 113 GLN 7 68 36 26 72.2 1.4 >sigma
1 114 ASP 4 42 21 12 57.1 0.5 .
1 115 ASN 6 41 20 15 75.0 1.6 >sigma
1 116 ASN 6 63 39 20 51.3 0.1 .
1 117 GLU 5 13 16 7 43.8 -0.4 .
1 118 THR 4 22 23 13 56.5 0.4 .
1 119 GLU 5 25 16 12 75.0 1.6 >sigma
1 120 LYS 7 9 16 4 25.0 -1.6 >sigma
1 121 GLU 5 13 28 7 25.0 -1.6 >sigma
1 122 GLN 7 39 50 20 40.0 -0.7 .
1 123 LYS 7 26 22 11 50.0 -0.0 .
1 124 HIS 6 20 18 6 33.3 -1.1 >sigma
1 125 SER 4 22 26 10 38.5 -0.8 .
1 126 GLU 5 43 35 21 60.0 0.6 .
1 127 ASP 4 23 18 8 44.4 -0.4 .
1 128 ASN 6 25 17 9 52.9 0.2 .
1 129 TRP 10 67 54 26 48.1 -0.1 .
1 130 ASN 6 33 26 16 61.5 0.7 .
1 131 THR 4 21 17 10 58.8 0.6 .
1 132 MET 6 17 26 10 38.5 -0.8 .
1 133 LEU 7 38 44 16 36.4 -0.9 .
1 134 GLU 5 17 19 10 52.6 0.2 .
1 135 GLY 3 13 16 6 37.5 -0.8 .
1 136 LEU 7 36 28 14 50.0 -0.0 .
1 137 LYS 7 23 37 11 29.7 -1.3 >sigma
1 138 LYS 7 12 17 5 29.4 -1.3 >sigma
1 139 PHE 7 29 23 10 43.5 -0.4 .
1 140 LEU 7 25 34 10 29.4 -1.3 >sigma
1 141 GLU 5 19 15 9 60.0 0.6 .
1 142 ASN 6 16 15 8 53.3 0.2 .
1 143 LYS 7 22 15 7 46.7 -0.2 .
1 144 VAL 5 24 14 10 71.4 1.4 >sigma
1 145 SER 4 8 12 7 58.3 0.5 .
1 146 ALA 3 4 6 2 33.3 -1.1 >sigma
stop_
save_
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