NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
492410 |
2k4w   |
15112 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2k4w
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 30
_NOE_completeness_stats.Residue_count 156
_NOE_completeness_stats.Total_atom_count 2192
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 772
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 59.3
_NOE_completeness_stats.Constraint_unexpanded_count 2795
_NOE_completeness_stats.Constraint_count 2795
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1884
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 16
_NOE_completeness_stats.Constraint_intraresidue_count 202
_NOE_completeness_stats.Constraint_surplus_count 71
_NOE_completeness_stats.Constraint_observed_count 2506
_NOE_completeness_stats.Constraint_expected_count 1832
_NOE_completeness_stats.Constraint_matched_count 1087
_NOE_completeness_stats.Constraint_unmatched_count 1419
_NOE_completeness_stats.Constraint_exp_nonobs_count 745
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 907 556 441 79.3 1.0 >sigma
medium-range 350 200 106 53.0 -0.4 .
long-range 1249 1076 540 50.2 -0.6 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 2 2 0 0 0 1 0 0 0 0 . 1 100.0 100.0
shell 2.00 2.50 208 178 0 0 44 15 39 23 12 14 . 31 85.6 85.7
shell 2.50 3.00 314 223 0 0 15 5 29 36 44 35 . 59 71.0 76.9
shell 3.00 3.50 487 296 0 0 7 2 23 44 59 52 . 109 60.8 69.1
shell 3.50 4.00 821 388 0 0 2 0 10 28 70 72 . 206 47.3 59.3
shell 4.00 4.50 1312 463 0 0 0 0 3 19 57 121 . 263 35.3 49.3
shell 4.50 5.00 1887 447 0 0 0 0 0 4 28 66 . 349 23.7 39.7
shell 5.00 5.50 2234 298 0 0 0 0 1 1 3 18 . 275 13.3 31.6
shell 5.50 6.00 2479 140 0 0 0 0 0 1 1 8 . 130 5.6 25.0
shell 6.00 6.50 2761 41 0 0 0 0 0 0 1 1 . 39 1.5 19.8
shell 6.50 7.00 3111 23 0 0 0 0 0 1 1 2 . 19 0.7 16.0
shell 7.00 7.50 3490 5 0 0 0 0 0 0 0 0 . 5 0.1 13.1
shell 7.50 8.00 3682 2 0 0 0 0 0 0 1 0 . 1 0.1 11.0
shell 8.00 8.50 4026 0 0 0 0 0 0 0 0 0 . 0 0.0 9.3
shell 8.50 9.00 4352 0 0 0 0 0 0 0 0 0 . 0 0.0 8.0
sums . . 31166 2506 0 0 68 23 105 157 277 389 . 1,487 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 ALA 3 9 6 3 50.0 -0.8 .
1 2 SER 4 35 13 12 92.3 1.8 >sigma
1 3 GLU 5 35 28 16 57.1 -0.4 .
1 4 LYS 7 24 16 6 37.5 -1.6 >sigma
1 5 VAL 5 38 40 16 40.0 -1.5 >sigma
1 6 GLY 3 24 10 8 80.0 1.0 >sigma
1 7 MET 6 51 51 29 56.9 -0.4 .
1 8 ASN 6 59 26 20 76.9 0.8 .
1 9 LEU 7 44 36 18 50.0 -0.8 .
1 10 VAL 5 62 43 30 69.8 0.4 .
1 11 THR 4 23 16 11 68.8 0.3 .
1 12 ALA 3 27 21 15 71.4 0.5 .
1 13 GLN 7 21 13 10 76.9 0.8 .
1 14 GLY 3 26 18 13 72.2 0.6 .
1 15 VAL 5 39 22 16 72.7 0.6 .
1 16 GLY 3 24 9 8 88.9 1.6 >sigma
1 17 GLN 7 31 19 15 78.9 1.0 .
1 18 SER 4 32 20 16 80.0 1.0 >sigma
1 19 ILE 6 17 34 10 29.4 -2.1 >sigma
1 20 GLY 3 28 22 18 81.8 1.2 >sigma
1 21 THR 4 38 26 20 76.9 0.8 .
1 22 VAL 5 47 51 25 49.0 -0.9 .
1 23 VAL 5 27 26 12 46.2 -1.1 >sigma
1 24 ILE 6 81 58 30 51.7 -0.7 .
1 25 ASP 4 47 18 13 72.2 0.6 .
1 26 GLU 5 38 26 17 65.4 0.1 .
1 27 THR 4 32 20 13 65.0 0.1 .
1 28 GLU 5 16 9 9 100.0 2.3 >sigma
1 29 GLY 3 18 13 10 76.9 0.8 .
1 30 GLY 3 26 16 11 68.8 0.3 .
1 31 LEU 7 74 54 30 55.6 -0.5 .
1 32 LYS 7 54 30 20 66.7 0.2 .
1 33 PHE 7 89 58 36 62.1 -0.1 .
1 34 THR 4 34 22 12 54.5 -0.6 .
1 35 PRO 5 33 45 23 51.1 -0.8 .
1 36 HIS 6 34 18 10 55.6 -0.5 .
1 37 LEU 7 67 61 37 60.7 -0.2 .
1 38 LYS 7 43 34 20 58.8 -0.3 .
1 39 ALA 3 24 19 13 68.4 0.3 .
1 40 LEU 7 48 49 21 42.9 -1.3 >sigma
1 41 PRO 5 23 16 9 56.3 -0.4 .
1 42 PRO 5 24 21 9 42.9 -1.3 >sigma
1 43 GLY 3 20 9 7 77.8 0.9 .
1 44 GLU 5 27 21 14 66.7 0.2 .
1 45 HIS 6 57 27 21 77.8 0.9 .
1 46 GLY 3 26 25 11 44.0 -1.2 >sigma
1 47 PHE 7 100 57 35 61.4 -0.1 .
1 48 HIS 6 25 27 10 37.0 -1.7 >sigma
1 49 ILE 6 57 61 30 49.2 -0.9 .
1 50 HIS 6 31 30 13 43.3 -1.3 >sigma
1 51 ALA 3 34 29 17 58.6 -0.3 .
1 52 ASN 6 45 21 17 81.0 1.1 >sigma
1 53 GLY 3 29 18 15 83.3 1.2 >sigma
1 54 SER 4 30 13 11 84.6 1.3 >sigma
1 55 CYS 4 26 18 11 61.1 -0.1 .
1 56 GLN 7 24 17 11 64.7 0.1 .
1 57 PRO 5 37 32 21 65.6 0.1 .
1 58 ALA 3 28 20 12 60.0 -0.2 .
1 59 ILE 6 32 20 15 75.0 0.7 .
1 60 LYS 7 29 15 10 66.7 0.2 .
1 61 ASP 4 16 8 7 87.5 1.5 >sigma
1 62 GLY 3 21 7 7 100.0 2.3 >sigma
1 63 GLN 7 30 13 11 84.6 1.3 >sigma
1 64 ALA 3 29 23 15 65.2 0.1 .
1 65 VAL 5 30 30 16 53.3 -0.6 .
1 66 ALA 3 23 21 11 52.4 -0.7 .
1 67 ALA 3 29 25 15 60.0 -0.2 .
1 68 GLU 5 34 24 15 62.5 -0.1 .
1 69 ALA 3 24 17 11 64.7 0.1 .
1 70 ALA 3 32 22 15 68.2 0.3 .
1 71 GLY 3 23 17 12 70.6 0.4 .
1 72 GLY 3 11 8 6 75.0 0.7 .
1 73 HIS 6 7 16 4 25.0 -2.4 >sigma
1 74 LEU 7 42 49 24 49.0 -0.9 .
1 75 ASP 4 26 14 6 42.9 -1.3 >sigma
1 76 PRO 5 24 10 9 90.0 1.7 >sigma
1 77 GLN 7 20 10 9 90.0 1.7 >sigma
1 78 ASN 6 29 11 8 72.7 0.6 .
1 79 THR 4 26 17 13 76.5 0.8 .
1 80 GLY 3 17 7 6 85.7 1.4 >sigma
1 81 LYS 7 26 11 7 63.6 0.0 .
1 82 HIS 6 14 18 7 38.9 -1.5 >sigma
1 83 GLU 5 32 17 11 64.7 0.1 .
1 84 GLY 3 19 11 7 63.6 0.0 .
1 85 PRO 5 15 12 8 66.7 0.2 .
1 86 GLU 5 14 13 11 84.6 1.3 >sigma
1 87 GLY 3 16 8 7 87.5 1.5 >sigma
1 88 GLN 7 15 7 6 85.7 1.4 >sigma
1 89 GLY 3 24 18 13 72.2 0.6 .
1 90 HIS 6 19 22 7 31.8 -2.0 >sigma
1 91 LEU 7 34 21 8 38.1 -1.6 >sigma
1 92 GLY 3 28 28 16 57.1 -0.4 .
1 93 ASP 4 12 16 9 56.3 -0.4 .
1 94 LEU 7 58 47 24 51.1 -0.8 .
1 95 PRO 5 30 24 14 58.3 -0.3 .
1 96 VAL 5 29 29 12 41.4 -1.4 >sigma
1 97 LEU 7 78 52 22 42.3 -1.3 >sigma
1 98 VAL 5 32 26 13 50.0 -0.8 .
1 99 VAL 5 56 39 25 64.1 0.0 .
1 100 ASN 6 47 25 18 72.0 0.5 .
1 101 ASN 6 27 12 8 66.7 0.2 .
1 102 ASP 4 29 19 12 63.2 -0.0 .
1 103 GLY 3 26 22 12 54.5 -0.6 .
1 104 ILE 6 59 40 26 65.0 0.1 .
1 105 ALA 3 45 36 24 66.7 0.2 .
1 106 THR 4 29 17 13 76.5 0.8 .
1 107 GLU 5 26 20 12 60.0 -0.2 .
1 108 PRO 5 24 20 12 60.0 -0.2 .
1 109 VAL 5 42 31 21 67.7 0.3 .
1 110 THR 4 48 26 19 73.1 0.6 .
1 111 ALA 3 44 33 17 51.5 -0.7 .
1 112 PRO 5 18 17 8 47.1 -1.0 >sigma
1 113 ARG 7 26 12 9 75.0 0.7 .
1 114 LEU 7 39 43 18 41.9 -1.4 >sigma
1 115 LYS 7 23 9 6 66.7 0.2 .
1 116 SER 4 42 19 19 100.0 2.3 >sigma
1 117 LEU 7 60 48 26 54.2 -0.6 .
1 118 ASP 4 31 17 14 82.4 1.2 >sigma
1 119 GLU 5 27 21 13 61.9 -0.1 .
1 120 VAL 5 48 57 24 42.1 -1.3 >sigma
1 121 LYS 7 37 18 16 88.9 1.6 >sigma
1 122 ASP 4 22 13 9 69.2 0.4 .
1 123 LYS 7 48 50 24 48.0 -1.0 .
1 124 ALA 3 47 29 21 72.4 0.6 .
1 125 LEU 7 59 58 28 48.3 -0.9 .
1 126 MET 6 35 36 17 47.2 -1.0 >sigma
1 127 ILE 6 60 57 27 47.4 -1.0 >sigma
1 128 HIS 6 16 20 6 30.0 -2.1 >sigma
1 129 VAL 5 36 24 18 75.0 0.7 .
1 130 GLY 3 21 14 10 71.4 0.5 .
1 131 GLY 3 17 14 8 57.1 -0.4 .
1 132 ASP 4 22 19 9 47.4 -1.0 >sigma
1 133 ASN 6 23 11 6 54.5 -0.6 .
1 134 MET 6 23 12 6 50.0 -0.8 .
1 135 SER 4 14 6 5 83.3 1.2 >sigma
1 136 ASP 4 21 7 6 85.7 1.4 >sigma
1 137 GLN 7 24 14 4 28.6 -2.2 >sigma
1 138 PRO 5 9 10 5 50.0 -0.8 .
1 139 LYS 7 25 13 9 69.2 0.4 .
1 140 PRO 5 18 9 8 88.9 1.6 >sigma
1 141 LEU 7 28 16 7 43.8 -1.2 >sigma
1 142 GLY 3 26 9 6 66.7 0.2 .
1 143 GLY 3 20 10 6 60.0 -0.2 .
1 144 GLY 3 15 12 7 58.3 -0.3 .
1 145 GLY 3 12 13 7 53.8 -0.6 .
1 146 THR 4 16 12 9 75.0 0.7 .
1 147 ARG 7 24 32 12 37.5 -1.6 >sigma
1 148 TYR 6 55 35 25 71.4 0.5 .
1 149 ALA 3 39 35 24 68.6 0.3 .
1 150 CYS 4 47 24 21 87.5 1.5 >sigma
1 151 GLY 3 33 23 16 69.6 0.4 .
1 152 VAL 5 34 24 17 70.8 0.5 .
1 153 ILE 6 46 52 20 38.5 -1.6 >sigma
1 154 LYS 7 13 8 6 75.0 0.7 .
stop_
save_
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