NMR Restraints Grid |
Result table
image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
445904 | 2kku | 16372 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2kku save_NOE_Completeness _NOE_completeness_stats.Sf_category NOE_completeness_statistics _NOE_completeness_stats.Model_count 20 _NOE_completeness_stats.Residue_count 161 _NOE_completeness_stats.Total_atom_count 2397 _NOE_completeness_stats.Observable_atom_definition ob_standard _NOE_completeness_stats.Observable_atom_count 843 _NOE_completeness_stats.Use_intra_residue_restraints no _NOE_completeness_stats.Redundancy_threshold_pct 5.0 _NOE_completeness_stats.Distance_averaging_power 1.00 _NOE_completeness_stats.Completeness_cutoff 4.00 _NOE_completeness_stats.Completeness_cumulative_pct 59.3 _NOE_completeness_stats.Constraint_unexpanded_count 3493 _NOE_completeness_stats.Constraint_count 3493 _NOE_completeness_stats.Constraint_exp_unfiltered_count 2341 _NOE_completeness_stats.Constraint_exceptional_count 0 _NOE_completeness_stats.Constraint_nonobservable_count 87 _NOE_completeness_stats.Constraint_intraresidue_count 754 _NOE_completeness_stats.Constraint_surplus_count 191 _NOE_completeness_stats.Constraint_observed_count 2461 _NOE_completeness_stats.Constraint_expected_count 2188 _NOE_completeness_stats.Constraint_matched_count 1297 _NOE_completeness_stats.Constraint_unmatched_count 1164 _NOE_completeness_stats.Constraint_exp_nonobs_count 891 _NOE_completeness_stats.Details ; A detailed methodology description is available at: http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html Please note that the contributions in ambiguous restraints are considered separate 'restraints' for the sets defined below. The cut off for all statistics except those in the by-shell table is given below by the above tag: _NOE_completeness_stats.Completeness_cutoff Description of the tags in this list: * 1 * Administrative tag * 2 * Administrative tag * 3 * Administrative tag * 4 * Number of models * 5 * Number of residues * 6 * Number of atoms * 7 * Standard set name of observable atom definitions see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999). * 8 * Observable atom(group)s * 9 * Include intra residue restraints * 10 * Surplus threshold for determining redundant restraints * 11 * Power for averaging the distance over models * 12 * Up to what distance are NOEs expected * 13 * Cumulative completeness percentage * 14 * Number of unexpanded restraints in restraint list. * 15 * Number of restraints in restraint list. Set U * 16 * Expected restraints based on criteria in list. Set V Set V differs from set B only if intra residue restraints are analyzed. * 17 * Exceptional restraints, i.e. with an unknown atom.Set E * 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O Even though restraints with these atom types might have been observed they are excluded from the analysis. * 19 * Intra-residue restraints if not to be analyzed. Set I * 20 * Surplus like double restraints. Set S * 21 * Observed restraints. Set A = U - (E u O u I u S) * 22 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 23 * Observed restraints matched to the expected. Set M = A n B * 24 * Observed restraints that were not expected. Set C = A - M * 25 * Expected restraints that were not observed. Set D = B - M * 26 * This tag Description of the tags in the class table: * 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts. Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular. * 2 * Observed restraints. Set A = U - (E u O u I u S) * 3 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 4 * Observed restraints matched to the expected. Set M = A n B * 5 * Completeness percentage * 6 * Standard deviation from the average over the classes. * 7 * Extra information * 8 * Administrative tag * 9 * Administrative tag Description of the tags in the shell table. The first row shows the lower limit of the shells requested and The last row shows the total number of restraints over the shells. * 1 * Description of the content of the row: edges, shell, or sums. The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others. * 2 * Lower limit of shell of expected restraints. * 3 * Upper limit of shell of expected restraints. * 4 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 5 * Observed restraints matched to the expected. Set M = A n B * 6 * Matched restraints with experimental distance in shell 1 * 7 * Matched restraints with experimental distance in shell 2 * 8 * Matched restraints with experimental distance in shell 3 * 9 * Matched restraints with experimental distance in shell 4 * 10 * Matched restraints with experimental distance in shell 5 * 11 * Matched restraints with experimental distance in shell 6 * 12 * Matched restraints with experimental distance in shell 7 * 13 * Matched restraints with experimental distance in shell 8 * 14 * Matched restraints with experimental distance in shell 9 * 15 * Matched restraints overflowing the last shell * 16 * Completeness percentage for this shell * 17 * Completeness percentage up to upper limit of this shell * 18 * Administrative tag * 19 * Administrative tag Description of the tags in the residue table: * 1 * Chain identifier * 2 * Residue number * 3 * Residue name * 4 * Observable atom(group)s for this residue. * 5 * Observed restraints. Set A = U - (E u O u I u S) * 6 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 7 * Observed restraints matched to the expected. Set M = A n B * 8 * Completeness percentage * 9 * Standard deviation from the average over the residues. * 10 * Extra information * 11 * Administrative tag * 12 * Administrative tag ; loop_ _NOE_completeness_class.Type _NOE_completeness_class.Constraint_observed_count _NOE_completeness_class.Constraint_expected_count _NOE_completeness_class.Constraint_matched_count _NOE_completeness_class.Completeness_cumulative_pct _NOE_completeness_class.Std_dev _NOE_completeness_class.Details intraresidue 0 0 0 . . "no intras" sequential 690 622 353 56.8 -0.8 . medium-range 514 444 260 58.6 -0.1 . long-range 1257 1122 684 61.0 0.9 . intermolecular 0 0 0 . . "no multimer" stop_ loop_ _NOE_completeness_shell.Type _NOE_completeness_shell.Shell_start _NOE_completeness_shell.Shell_end _NOE_completeness_shell.Constraint_expected_count _NOE_completeness_shell.Constraint_matched_count _NOE_completeness_shell.Matched_shell_1 _NOE_completeness_shell.Matched_shell_2 _NOE_completeness_shell.Matched_shell_3 _NOE_completeness_shell.Matched_shell_4 _NOE_completeness_shell.Matched_shell_5 _NOE_completeness_shell.Matched_shell_6 _NOE_completeness_shell.Matched_shell_7 _NOE_completeness_shell.Matched_shell_8 _NOE_completeness_shell.Matched_shell_9 _NOE_completeness_shell.Matched_shell_overflow _NOE_completeness_shell.Completeness_shell_pct _NOE_completeness_shell.Completeness_cumulative_pct edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . . shell 0.00 2.00 43 36 0 2 0 17 0 0 17 0 . 0 83.7 83.7 shell 2.00 2.50 270 222 0 9 0 108 0 0 103 0 . 2 82.2 82.4 shell 2.50 3.00 390 276 0 0 0 84 0 0 187 0 . 5 70.8 76.0 shell 3.00 3.50 548 318 0 1 0 47 0 0 256 0 . 14 58.0 68.1 shell 3.50 4.00 937 445 0 0 0 11 0 0 394 0 . 40 47.5 59.3 shell 4.00 4.50 1436 513 0 0 0 0 0 0 396 0 . 117 35.7 49.9 shell 4.50 5.00 1940 400 0 0 0 0 0 0 231 0 . 169 20.6 39.7 shell 5.00 5.50 2368 186 0 0 0 0 0 0 33 0 . 153 7.9 30.2 shell 5.50 6.00 2799 59 0 0 0 0 0 0 0 0 . 59 2.1 22.9 shell 6.00 6.50 3106 5 0 0 0 0 0 0 0 0 . 5 0.2 17.8 shell 6.50 7.00 3499 1 0 0 0 0 0 0 0 0 . 1 0.0 14.2 shell 7.00 7.50 3931 0 0 0 0 0 0 0 0 0 . 0 0.0 11.6 shell 7.50 8.00 4314 0 0 0 0 0 0 0 0 0 . 0 0.0 9.6 shell 8.00 8.50 4609 0 0 0 0 0 0 0 0 0 . 0 0.0 8.2 shell 8.50 9.00 4818 0 0 0 0 0 0 0 0 0 . 0 0.0 7.0 sums . . 35008 2461 0 12 0 267 0 0 1,617 0 . 565 . . stop_ loop_ _NOE_completeness_comp.Entity_assembly_ID _NOE_completeness_comp.Comp_index_ID _NOE_completeness_comp.Comp_ID _NOE_completeness_comp.Obs_atom_count _NOE_completeness_comp.Constraint_observed_count _NOE_completeness_comp.Constraint_expected_count _NOE_completeness_comp.Constraint_matched_count _NOE_completeness_comp.Completeness_cumulative_pct _NOE_completeness_comp.Std_dev _NOE_completeness_comp.Details 1 23 MET 6 10 12 4 33.3 -0.8 . 1 24 SER 4 18 10 9 90.0 1.4 >sigma 1 25 LYS 7 31 27 12 44.4 -0.4 . 1 26 ILE 6 55 48 33 68.8 0.6 . 1 27 VAL 5 70 45 34 75.6 0.8 . 1 28 GLY 3 40 29 24 82.8 1.1 >sigma 1 29 VAL 5 78 53 44 83.0 1.1 >sigma 1 30 THR 4 50 39 30 76.9 0.9 . 1 31 TYR 6 51 48 23 47.9 -0.3 . 1 32 PRO 5 28 34 17 50.0 -0.2 . 1 33 ILE 6 32 53 17 32.1 -0.9 . 1 34 PRO 5 0 10 0 0.0 -2.2 >sigma 1 35 LYS 7 0 14 0 0.0 -2.2 >sigma 1 36 ARG 7 6 9 2 22.2 -1.3 >sigma 1 37 PHE 7 27 40 13 32.5 -0.9 . 1 38 MET 6 0 29 0 0.0 -2.2 >sigma 1 39 ASP 4 19 14 7 50.0 -0.2 . 1 40 ARG 7 40 46 21 45.7 -0.4 . 1 41 PHE 7 64 72 36 50.0 -0.2 . 1 42 PHE 7 64 50 37 74.0 0.8 . 1 43 LYS 7 34 32 18 56.3 0.1 . 1 44 LYS 7 33 54 17 31.5 -0.9 . 1 45 GLY 3 19 13 8 61.5 0.3 . 1 46 LYS 7 13 17 7 41.2 -0.5 . 1 47 ASP 4 30 36 15 41.7 -0.5 . 1 48 VAL 5 82 50 41 82.0 1.1 >sigma 1 49 PHE 7 63 67 32 47.8 -0.3 . 1 50 VAL 5 57 47 24 51.1 -0.1 . 1 51 LYS 7 21 58 9 15.5 -1.5 >sigma 1 52 PRO 5 12 22 5 22.7 -1.3 >sigma 1 53 ALA 3 16 21 7 33.3 -0.8 . 1 54 THR 4 9 24 6 25.0 -1.2 >sigma 1 55 VAL 5 31 48 22 45.8 -0.4 . 1 56 TRP 10 0 12 0 0.0 -2.2 >sigma 1 57 LYS 7 5 9 3 33.3 -0.8 . 1 58 GLU 5 26 27 15 55.6 0.0 . 1 59 LEU 7 63 57 35 61.4 0.3 . 1 60 LYS 7 35 25 16 64.0 0.4 . 1 61 PRO 5 28 29 14 48.3 -0.3 . 1 62 GLY 3 20 14 8 57.1 0.1 . 1 63 MET 6 71 54 38 70.4 0.6 . 1 64 LYS 7 70 57 38 66.7 0.5 . 1 65 PHE 7 111 77 62 80.5 1.0 >sigma 1 66 VAL 5 66 44 34 77.3 0.9 . 1 67 PHE 7 66 66 38 57.6 0.1 . 1 68 TYR 6 48 48 29 60.4 0.2 . 1 69 GLN 7 0 17 0 0.0 -2.2 >sigma 1 70 SER 4 0 7 0 0.0 -2.2 >sigma 1 71 HIS 6 1 7 1 14.3 -1.6 >sigma 1 72 GLU 5 1 9 1 11.1 -1.7 >sigma 1 73 ASP 4 0 9 0 0.0 -2.2 >sigma 1 74 THR 4 0 8 0 0.0 -2.2 >sigma 1 75 GLY 3 0 15 0 0.0 -2.2 >sigma 1 76 PHE 7 24 51 14 27.5 -1.1 >sigma 1 77 VAL 5 24 35 15 42.9 -0.5 . 1 78 GLY 3 40 29 20 69.0 0.6 . 1 79 GLU 5 60 37 33 89.2 1.4 >sigma 1 80 ALA 3 58 39 30 76.9 0.9 . 1 81 ARG 7 59 38 26 68.4 0.5 . 1 82 ILE 6 114 75 59 78.7 0.9 . 1 83 LYS 7 37 37 19 51.4 -0.1 . 1 84 ARG 7 23 25 12 48.0 -0.3 . 1 85 VAL 5 56 40 23 57.5 0.1 . 1 86 VAL 5 42 27 18 66.7 0.5 . 1 87 LEU 7 47 30 22 73.3 0.7 . 1 88 SER 4 35 22 17 77.3 0.9 . 1 89 GLU 5 37 26 21 80.8 1.0 >sigma 1 90 ASN 6 30 23 22 95.7 1.6 >sigma 1 91 PRO 5 42 38 24 63.2 0.3 . 1 92 MET 6 44 38 27 71.1 0.6 . 1 93 GLN 7 41 24 19 79.2 1.0 . 1 94 PHE 7 64 68 38 55.9 0.0 . 1 95 PHE 7 74 65 42 64.6 0.4 . 1 96 GLU 5 21 14 10 71.4 0.7 . 1 97 THR 4 33 19 15 78.9 1.0 . 1 98 PHE 7 62 60 40 66.7 0.5 . 1 99 GLY 3 27 17 15 88.2 1.3 >sigma 1 100 ASP 4 14 8 5 62.5 0.3 . 1 101 ARG 7 37 38 18 47.4 -0.3 . 1 102 VAL 5 66 54 41 75.9 0.8 . 1 103 PHE 7 20 56 11 19.6 -1.4 >sigma 1 104 LEU 7 70 58 37 63.8 0.4 . 1 105 THR 4 40 20 19 95.0 1.6 >sigma 1 106 LYS 7 41 40 21 52.5 -0.1 . 1 107 ASP 4 33 19 15 78.9 1.0 . 1 108 GLU 5 48 34 25 73.5 0.7 . 1 109 LEU 7 88 67 47 70.1 0.6 . 1 110 LYS 7 44 37 23 62.2 0.3 . 1 111 GLU 5 30 21 16 76.2 0.8 . 1 112 TYR 6 54 35 26 74.3 0.8 . 1 113 MET 6 46 35 24 68.6 0.5 . 1 114 LYS 7 32 22 14 63.6 0.4 . 1 115 SER 4 40 23 16 69.6 0.6 . 1 116 GLN 7 30 22 17 77.3 0.9 . 1 117 GLU 5 23 17 13 76.5 0.9 . 1 118 ARG 7 25 20 12 60.0 0.2 . 1 119 TRP 10 26 19 12 63.2 0.3 . 1 120 GLY 3 7 9 4 44.4 -0.4 . 1 121 ARG 7 0 7 0 0.0 -2.2 >sigma 1 122 ARG 7 2 9 2 22.2 -1.3 >sigma 1 123 ARG 7 2 10 2 20.0 -1.4 >sigma 1 124 GLU 5 0 10 0 0.0 -2.2 >sigma 1 125 SER 4 0 9 0 0.0 -2.2 >sigma 1 126 LYS 7 4 9 3 33.3 -0.8 . 1 127 LYS 7 10 14 6 42.9 -0.5 . 1 128 LYS 7 20 23 13 56.5 0.1 . 1 129 LYS 7 21 22 13 59.1 0.2 . 1 130 LEU 7 52 40 31 77.5 0.9 . 1 131 TRP 10 64 59 30 50.8 -0.2 . 1 132 MET 6 65 54 34 63.0 0.3 . 1 133 ALA 3 52 35 24 68.6 0.5 . 1 134 ILE 6 98 62 50 80.6 1.0 >sigma 1 135 GLU 5 33 28 19 67.9 0.5 . 1 136 LEU 7 96 71 49 69.0 0.6 . 1 137 GLU 5 44 32 24 75.0 0.8 . 1 138 ASP 4 22 15 13 86.7 1.3 >sigma 1 139 VAL 5 71 51 40 78.4 0.9 . 1 140 LYS 7 31 15 13 86.7 1.3 >sigma 1 141 LYS 7 50 34 25 73.5 0.7 . 1 142 TYR 6 54 40 23 57.5 0.1 . 1 143 ASP 4 4 8 2 25.0 -1.2 >sigma 1 144 LYS 7 17 19 7 36.8 -0.7 . 1 145 PRO 5 6 4 3 75.0 0.8 . 1 146 ILE 6 25 28 13 46.4 -0.3 . 1 147 LYS 7 11 9 5 55.6 0.0 . 1 148 PRO 5 24 31 13 41.9 -0.5 . 1 149 LYS 7 3 10 1 10.0 -1.8 >sigma 1 150 ARG 7 20 16 8 50.0 -0.2 . 1 151 LEU 7 19 13 10 76.9 0.9 . 1 152 VAL 5 60 50 35 70.0 0.6 . 1 153 PRO 5 28 26 22 84.6 1.2 >sigma 1 154 VAL 5 16 15 11 73.3 0.7 . 1 155 GLY 3 12 13 9 69.2 0.6 . 1 156 GLY 3 29 24 19 79.2 1.0 . 1 157 GLN 7 46 36 28 77.8 0.9 . 1 158 TYR 6 45 40 28 70.0 0.6 . 1 159 LEU 7 60 39 28 71.8 0.7 . 1 160 ARG 7 54 32 21 65.6 0.4 . 1 161 GLU 5 30 21 14 66.7 0.5 . stop_ save_
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