NMR Restraints Grid |
Result table
image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
397604 | 1sy9 | 5480 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1sy9 save_NOE_Completeness _NOE_completeness_stats.Sf_category NOE_completeness_statistics _NOE_completeness_stats.Model_count 20 _NOE_completeness_stats.Residue_count 178 _NOE_completeness_stats.Total_atom_count 2596 _NOE_completeness_stats.Observable_atom_definition ob_standard _NOE_completeness_stats.Observable_atom_count 900 _NOE_completeness_stats.Use_intra_residue_restraints no _NOE_completeness_stats.Redundancy_threshold_pct 5.0 _NOE_completeness_stats.Distance_averaging_power 1.00 _NOE_completeness_stats.Completeness_cutoff 4.00 _NOE_completeness_stats.Completeness_cumulative_pct 50.0 _NOE_completeness_stats.Constraint_unexpanded_count 2623 _NOE_completeness_stats.Constraint_count 2623 _NOE_completeness_stats.Constraint_exp_unfiltered_count 2022 _NOE_completeness_stats.Constraint_exceptional_count 0 _NOE_completeness_stats.Constraint_nonobservable_count 124 _NOE_completeness_stats.Constraint_intraresidue_count 762 _NOE_completeness_stats.Constraint_surplus_count 38 _NOE_completeness_stats.Constraint_observed_count 1699 _NOE_completeness_stats.Constraint_expected_count 1993 _NOE_completeness_stats.Constraint_matched_count 996 _NOE_completeness_stats.Constraint_unmatched_count 703 _NOE_completeness_stats.Constraint_exp_nonobs_count 997 _NOE_completeness_stats.Details ; A detailed methodology description is available at: http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html Please note that the contributions in ambiguous restraints are considered separate 'restraints' for the sets defined below. The cut off for all statistics except those in the by-shell table is given below by the above tag: _NOE_completeness_stats.Completeness_cutoff Description of the tags in this list: * 1 * Administrative tag * 2 * Administrative tag * 3 * Administrative tag * 4 * Number of models * 5 * Number of residues * 6 * Number of atoms * 7 * Standard set name of observable atom definitions see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999). * 8 * Observable atom(group)s * 9 * Include intra residue restraints * 10 * Surplus threshold for determining redundant restraints * 11 * Power for averaging the distance over models * 12 * Up to what distance are NOEs expected * 13 * Cumulative completeness percentage * 14 * Number of unexpanded restraints in restraint list. * 15 * Number of restraints in restraint list. Set U * 16 * Expected restraints based on criteria in list. Set V Set V differs from set B only if intra residue restraints are analyzed. * 17 * Exceptional restraints, i.e. with an unknown atom.Set E * 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O Even though restraints with these atom types might have been observed they are excluded from the analysis. * 19 * Intra-residue restraints if not to be analyzed. Set I * 20 * Surplus like double restraints. Set S * 21 * Observed restraints. Set A = U - (E u O u I u S) * 22 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 23 * Observed restraints matched to the expected. Set M = A n B * 24 * Observed restraints that were not expected. Set C = A - M * 25 * Expected restraints that were not observed. Set D = B - M * 26 * This tag Description of the tags in the class table: * 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts. Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular. * 2 * Observed restraints. Set A = U - (E u O u I u S) * 3 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 4 * Observed restraints matched to the expected. Set M = A n B * 5 * Completeness percentage * 6 * Standard deviation from the average over the classes. * 7 * Extra information * 8 * Administrative tag * 9 * Administrative tag Description of the tags in the shell table. The first row shows the lower limit of the shells requested and The last row shows the total number of restraints over the shells. * 1 * Description of the content of the row: edges, shell, or sums. The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others. * 2 * Lower limit of shell of expected restraints. * 3 * Upper limit of shell of expected restraints. * 4 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 5 * Observed restraints matched to the expected. Set M = A n B * 6 * Matched restraints with experimental distance in shell 1 * 7 * Matched restraints with experimental distance in shell 2 * 8 * Matched restraints with experimental distance in shell 3 * 9 * Matched restraints with experimental distance in shell 4 * 10 * Matched restraints with experimental distance in shell 5 * 11 * Matched restraints with experimental distance in shell 6 * 12 * Matched restraints with experimental distance in shell 7 * 13 * Matched restraints with experimental distance in shell 8 * 14 * Matched restraints with experimental distance in shell 9 * 15 * Matched restraints overflowing the last shell * 16 * Completeness percentage for this shell * 17 * Completeness percentage up to upper limit of this shell * 18 * Administrative tag * 19 * Administrative tag Description of the tags in the residue table: * 1 * Chain identifier * 2 * Residue number * 3 * Residue name * 4 * Observable atom(group)s for this residue. * 5 * Observed restraints. Set A = U - (E u O u I u S) * 6 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 7 * Observed restraints matched to the expected. Set M = A n B * 8 * Completeness percentage * 9 * Standard deviation from the average over the residues. * 10 * Extra information * 11 * Administrative tag * 12 * Administrative tag ; loop_ _NOE_completeness_class.Type _NOE_completeness_class.Constraint_observed_count _NOE_completeness_class.Constraint_expected_count _NOE_completeness_class.Constraint_matched_count _NOE_completeness_class.Completeness_cumulative_pct _NOE_completeness_class.Std_dev _NOE_completeness_class.Details intraresidue 0 0 0 . . "no intras" sequential 692 780 476 61.0 1.1 >sigma medium-range 546 593 288 48.6 0.3 . long-range 372 472 192 40.7 -0.2 . intermolecular 89 148 40 27.0 -1.1 >sigma stop_ loop_ _NOE_completeness_shell.Type _NOE_completeness_shell.Shell_start _NOE_completeness_shell.Shell_end _NOE_completeness_shell.Constraint_expected_count _NOE_completeness_shell.Constraint_matched_count _NOE_completeness_shell.Matched_shell_1 _NOE_completeness_shell.Matched_shell_2 _NOE_completeness_shell.Matched_shell_3 _NOE_completeness_shell.Matched_shell_4 _NOE_completeness_shell.Matched_shell_5 _NOE_completeness_shell.Matched_shell_6 _NOE_completeness_shell.Matched_shell_7 _NOE_completeness_shell.Matched_shell_8 _NOE_completeness_shell.Matched_shell_9 _NOE_completeness_shell.Matched_shell_overflow _NOE_completeness_shell.Completeness_shell_pct _NOE_completeness_shell.Completeness_cumulative_pct edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . . shell 0.00 2.00 9 6 0 0 2 3 0 0 0 0 . 1 66.7 66.7 shell 2.00 2.50 113 89 0 0 44 19 0 0 0 0 . 26 78.8 77.9 shell 2.50 3.00 383 252 0 0 97 60 0 2 0 7 . 86 65.8 68.7 shell 3.00 3.50 541 252 0 0 32 75 0 7 0 9 . 129 46.6 57.3 shell 3.50 4.00 947 397 0 0 0 131 0 24 0 13 . 229 41.9 50.0 shell 4.00 4.50 1376 284 0 0 0 12 0 19 2 21 . 230 20.6 38.0 shell 4.50 5.00 1935 183 0 0 0 0 0 2 0 8 . 173 9.5 27.6 shell 5.00 5.50 2521 134 0 0 0 0 0 0 0 12 . 122 5.3 20.4 shell 5.50 6.00 3012 78 0 0 0 0 0 0 0 0 . 78 2.6 15.5 shell 6.00 6.50 3094 20 0 0 0 0 0 0 0 0 . 20 0.6 12.2 shell 6.50 7.00 3467 4 0 0 0 0 0 0 0 0 . 4 0.1 9.8 shell 7.00 7.50 3663 0 0 0 0 0 0 0 0 0 . 0 0.0 8.1 shell 7.50 8.00 3948 0 0 0 0 0 0 0 0 0 . 0 0.0 6.8 shell 8.00 8.50 4362 0 0 0 0 0 0 0 0 0 . 0 0.0 5.8 shell 8.50 9.00 4714 0 0 0 0 0 0 0 0 0 . 0 0.0 5.0 sums . . 34085 1699 0 0 175 300 0 54 2 70 . 1,098 . . stop_ loop_ _NOE_completeness_comp.Entity_assembly_ID _NOE_completeness_comp.Comp_index_ID _NOE_completeness_comp.Comp_ID _NOE_completeness_comp.Obs_atom_count _NOE_completeness_comp.Constraint_observed_count _NOE_completeness_comp.Constraint_expected_count _NOE_completeness_comp.Constraint_matched_count _NOE_completeness_comp.Completeness_cumulative_pct _NOE_completeness_comp.Std_dev _NOE_completeness_comp.Details 1 1 ALA 3 2 2 0 0.0 -2.6 >sigma 1 2 ASP 4 3 5 1 20.0 -1.6 >sigma 1 3 GLN 7 13 10 6 60.0 0.4 . 1 4 LEU 7 19 12 10 83.3 1.6 >sigma 1 5 THR 4 22 19 12 63.2 0.6 . 1 6 GLU 5 21 15 12 80.0 1.4 >sigma 1 7 GLU 5 17 17 11 64.7 0.6 . 1 8 GLN 7 20 25 12 48.0 -0.2 . 1 9 ILE 6 29 33 17 51.5 -0.0 . 1 10 ALA 3 22 20 12 60.0 0.4 . 1 11 GLU 5 22 18 13 72.2 1.0 >sigma 1 12 PHE 7 40 37 21 56.8 0.2 . 1 13 LYS 7 29 34 16 47.1 -0.2 . 1 14 GLU 5 15 15 7 46.7 -0.3 . 1 15 ALA 3 20 21 13 61.9 0.5 . 1 16 PHE 7 41 51 25 49.0 -0.1 . 1 17 SER 4 18 14 11 78.6 1.3 >sigma 1 18 LEU 7 22 24 12 50.0 -0.1 . 1 19 PHE 7 37 34 19 55.9 0.2 . 1 20 ASP 4 18 24 9 37.5 -0.7 . 1 21 LYS 7 11 11 4 36.4 -0.8 . 1 22 ASP 4 16 13 8 61.5 0.5 . 1 23 GLY 3 8 10 6 60.0 0.4 . 1 24 ASP 4 11 11 6 54.5 0.1 . 1 25 GLY 3 15 13 8 61.5 0.5 . 1 26 THR 4 25 15 11 73.3 1.1 >sigma 1 27 ILE 6 49 46 25 54.3 0.1 . 1 28 THR 4 28 18 10 55.6 0.2 . 1 29 THR 4 29 36 19 52.8 0.1 . 1 30 LYS 7 11 17 8 47.1 -0.2 . 1 31 GLU 5 18 24 10 41.7 -0.5 . 1 32 LEU 7 37 41 16 39.0 -0.6 . 1 33 GLY 3 16 20 9 45.0 -0.3 . 1 34 THR 4 13 20 9 45.0 -0.3 . 1 35 VAL 5 30 40 18 45.0 -0.3 . 1 36 MET 6 21 41 16 39.0 -0.6 . 1 37 ARG 7 21 31 15 48.4 -0.2 . 1 38 SER 4 13 10 8 80.0 1.4 >sigma 1 39 LEU 7 17 29 12 41.4 -0.5 . 1 40 GLY 3 7 8 7 87.5 1.8 >sigma 1 41 GLN 7 11 12 7 58.3 0.3 . 1 42 ASN 6 18 23 11 47.8 -0.2 . 1 43 PRO 5 16 29 8 27.6 -1.2 >sigma 1 44 THR 4 21 19 13 68.4 0.8 . 1 45 GLU 5 18 18 10 55.6 0.2 . 1 46 ALA 3 17 15 10 66.7 0.7 . 1 47 GLU 5 21 21 12 57.1 0.3 . 1 48 LEU 7 45 60 24 40.0 -0.6 . 1 49 GLN 7 26 24 18 75.0 1.2 >sigma 1 50 ASP 4 17 18 12 66.7 0.7 . 1 51 MET 6 17 28 11 39.3 -0.6 . 1 52 ILE 6 51 51 32 62.7 0.5 . 1 53 ASN 6 15 16 11 68.8 0.8 . 1 54 GLU 5 13 15 9 60.0 0.4 . 1 55 VAL 5 26 39 12 30.8 -1.0 >sigma 1 56 ASP 4 18 25 11 44.0 -0.4 . 1 57 ALA 3 14 12 7 58.3 0.3 . 1 58 ASP 4 17 15 11 73.3 1.1 >sigma 1 59 GLY 3 14 16 9 56.3 0.2 . 1 60 ASN 6 17 19 10 52.6 0.0 . 1 61 GLY 3 15 15 12 80.0 1.4 >sigma 1 62 THR 4 25 24 14 58.3 0.3 . 1 63 ILE 6 46 51 25 49.0 -0.1 . 1 64 ASP 4 23 23 15 65.2 0.7 . 1 65 PHE 7 25 35 12 34.3 -0.9 . 1 66 PRO 5 19 19 11 57.9 0.3 . 1 67 GLU 5 24 34 15 44.1 -0.4 . 1 68 PHE 7 29 49 18 36.7 -0.7 . 1 69 LEU 7 33 37 20 54.1 0.1 . 1 70 THR 4 14 12 10 83.3 1.6 >sigma 1 71 MET 6 31 36 20 55.6 0.2 . 1 72 MET 6 28 37 16 43.2 -0.4 . 1 73 ALA 3 11 15 8 53.3 0.1 . 1 74 ARG 7 14 15 8 53.3 0.1 . 1 75 LYS 7 13 24 9 37.5 -0.7 . 1 76 MET 6 22 20 8 40.0 -0.6 . 1 77 LYS 7 15 14 9 64.3 0.6 . 1 78 ASP 4 16 12 9 75.0 1.2 >sigma 1 79 THR 4 13 15 6 40.0 -0.6 . 1 80 ASP 4 12 19 10 52.6 0.0 . 1 81 SER 4 11 11 6 54.5 0.1 . 1 82 GLU 5 17 21 12 57.1 0.3 . 1 83 GLU 5 15 23 11 47.8 -0.2 . 1 84 GLU 5 15 24 9 37.5 -0.7 . 1 85 ILE 6 40 44 23 52.3 0.0 . 1 86 ARG 7 26 22 16 72.7 1.0 >sigma 1 87 GLU 5 15 28 11 39.3 -0.6 . 1 88 ALA 3 26 35 15 42.9 -0.4 . 1 89 PHE 7 35 51 17 33.3 -0.9 . 1 90 ARG 7 18 22 13 59.1 0.4 . 1 91 VAL 5 22 34 15 44.1 -0.4 . 1 92 PHE 7 42 53 27 50.9 -0.0 . 1 93 ASP 4 24 23 13 56.5 0.2 . 1 94 LYS 7 18 14 9 64.3 0.6 . 1 95 ASP 4 17 11 9 81.8 1.5 >sigma 1 96 GLY 3 13 11 9 81.8 1.5 >sigma 1 97 ASN 6 14 13 8 61.5 0.5 . 1 98 GLY 3 13 10 6 60.0 0.4 . 1 99 TYR 6 35 26 14 53.8 0.1 . 1 100 ILE 6 44 47 25 53.2 0.1 . 1 101 SER 4 20 20 11 55.0 0.2 . 1 102 ALA 3 19 21 15 71.4 1.0 . 1 103 ALA 3 17 18 10 55.6 0.2 . 1 104 GLU 5 18 28 13 46.4 -0.3 . 1 105 LEU 7 48 52 27 51.9 0.0 . 1 106 ARG 7 28 29 19 65.5 0.7 . 1 107 HIS 6 12 17 9 52.9 0.1 . 1 108 VAL 5 28 41 20 48.8 -0.1 . 1 109 MET 6 38 40 23 57.5 0.3 . 1 110 THR 4 22 14 12 85.7 1.7 >sigma 1 111 ASN 6 15 13 12 92.3 2.0 >sigma 1 112 LEU 7 27 37 16 43.2 -0.4 . 1 113 GLY 3 12 10 7 70.0 0.9 . 1 114 GLU 5 25 18 12 66.7 0.7 . 1 115 LYS 7 15 7 4 57.1 0.3 . 1 116 LEU 7 28 31 18 58.1 0.3 . 1 117 THR 4 21 19 14 73.7 1.1 >sigma 1 118 ASP 4 16 12 9 75.0 1.2 >sigma 1 119 GLU 5 17 18 10 55.6 0.2 . 1 120 GLU 5 29 32 21 65.6 0.7 . 1 121 VAL 5 52 50 32 64.0 0.6 . 1 122 ASP 4 22 19 14 73.7 1.1 >sigma 1 123 GLU 5 21 22 13 59.1 0.4 . 1 124 MET 6 30 36 16 44.4 -0.4 . 1 125 ILE 6 51 42 31 73.8 1.1 >sigma 1 126 ARG 7 27 23 18 78.3 1.3 >sigma 1 127 GLU 5 22 18 12 66.7 0.7 . 1 128 ALA 3 25 25 13 52.0 0.0 . 1 129 ASP 4 26 21 15 71.4 1.0 . 1 130 ILE 6 24 20 14 70.0 0.9 . 1 131 ASP 4 14 12 9 75.0 1.2 >sigma 1 132 GLY 3 15 9 8 88.9 1.8 >sigma 1 133 ASP 4 11 9 6 66.7 0.7 . 1 134 GLY 3 18 11 10 90.9 1.9 >sigma 1 135 GLN 7 28 20 12 60.0 0.4 . 1 136 VAL 5 49 38 25 65.8 0.7 . 1 137 ASN 6 26 21 13 61.9 0.5 . 1 138 TYR 6 20 26 14 53.8 0.1 . 1 139 GLU 5 20 20 12 60.0 0.4 . 1 140 GLU 5 24 37 16 43.2 -0.4 . 1 141 PHE 7 36 53 26 49.1 -0.1 . 1 142 VAL 5 29 31 20 64.5 0.6 . 1 143 GLN 7 18 23 11 47.8 -0.2 . 1 144 MET 6 29 35 20 57.1 0.3 . 1 145 MET 6 31 37 14 37.8 -0.7 . 1 146 THR 4 17 13 6 46.2 -0.3 . 1 147 ALA 3 15 15 9 60.0 0.4 . 1 148 LYS 7 2 5 2 40.0 -0.6 . 2 5 GLY 3 1 2 0 0.0 -2.6 >sigma 2 6 GLY 3 0 8 0 0.0 -2.6 >sigma 2 7 PHE 7 35 41 15 36.6 -0.7 . 2 8 ARG 7 2 20 2 10.0 -2.1 >sigma 2 9 ARG 7 1 16 1 6.3 -2.2 >sigma 2 10 ILE 6 6 31 5 16.1 -1.8 >sigma 2 11 ALA 3 4 27 3 11.1 -2.0 >sigma 2 12 ARG 7 3 13 2 15.4 -1.8 >sigma 2 13 LEU 7 4 25 3 12.0 -2.0 >sigma 2 14 VAL 5 9 44 6 13.6 -1.9 >sigma 2 15 GLY 3 5 22 1 4.5 -2.3 >sigma 2 16 VAL 5 6 27 4 14.8 -1.8 >sigma 2 17 LEU 7 6 33 4 12.1 -2.0 >sigma 2 18 ARG 7 2 20 1 5.0 -2.3 >sigma 2 19 GLU 5 2 18 2 11.1 -2.0 >sigma 2 20 TRP 10 25 41 11 26.8 -1.2 >sigma 2 21 ALA 3 3 17 3 17.6 -1.7 >sigma 2 22 TYR 6 1 13 1 7.7 -2.2 >sigma 2 23 ARG 7 0 12 0 0.0 -2.6 >sigma stop_ save_
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