NMR Restraints Grid
| |
NMR Restraints Grid |
|
Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | in_recoord | stage | program | type | subtype | subsubtype |
|
|
389311 |
1ni7   |
5630 | cing | recoord | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1ni7
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 155
_NOE_completeness_stats.Total_atom_count 2289
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 808
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 53.2
_NOE_completeness_stats.Constraint_unexpanded_count 2464
_NOE_completeness_stats.Constraint_count 2464
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2237
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 23
_NOE_completeness_stats.Constraint_intraresidue_count 475
_NOE_completeness_stats.Constraint_surplus_count 79
_NOE_completeness_stats.Constraint_observed_count 1887
_NOE_completeness_stats.Constraint_expected_count 2183
_NOE_completeness_stats.Constraint_matched_count 1161
_NOE_completeness_stats.Constraint_unmatched_count 726
_NOE_completeness_stats.Constraint_exp_nonobs_count 1022
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 737 676 514 76.0 1.0 .
medium-range 572 645 323 50.1 -0.2 .
long-range 578 862 324 37.6 -0.8 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 20 16 0 0 6 0 4 1 0 1 . 4 80.0 80.0
shell 2.00 2.50 207 156 0 20 32 22 17 20 6 7 . 32 75.4 75.8
shell 2.50 3.00 381 263 0 2 69 55 30 26 19 18 . 44 69.0 71.5
shell 3.00 3.50 587 299 0 0 15 66 53 34 29 15 . 87 50.9 61.4
shell 3.50 4.00 988 427 0 0 0 83 88 53 49 27 . 127 43.2 53.2
shell 4.00 4.50 1422 319 0 0 0 0 38 47 55 41 . 138 22.4 41.1
shell 4.50 5.00 2127 242 0 0 0 0 0 20 29 31 . 162 11.4 30.0
shell 5.00 5.50 2424 104 0 0 0 0 0 1 7 9 . 87 4.3 22.4
shell 5.50 6.00 2733 55 0 0 0 0 0 0 1 4 . 50 2.0 17.3
shell 6.00 6.50 3201 5 0 0 0 0 0 0 0 1 . 4 0.2 13.4
shell 6.50 7.00 3554 1 0 0 0 0 0 0 0 0 . 1 0.0 10.7
shell 7.00 7.50 3732 0 0 0 0 0 0 0 0 0 . 0 0.0 8.8
shell 7.50 8.00 4101 0 0 0 0 0 0 0 0 0 . 0 0.0 7.4
shell 8.00 8.50 4496 0 0 0 0 0 0 0 0 0 . 0 0.0 6.3
shell 8.50 9.00 4880 0 0 0 0 0 0 0 0 0 . 0 0.0 5.4
sums . . 34853 1887 0 22 122 226 230 202 195 154 . 736 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 0 4 0 0.0 -3.4 >sigma
1 2 THR 4 0 8 0 0.0 -3.4 >sigma
1 3 ASN 6 3 9 2 22.2 -2.0 >sigma
1 4 PRO 5 7 8 5 62.5 0.4 .
1 5 GLN 7 14 6 6 100.0 2.6 >sigma
1 6 PHE 7 14 8 5 62.5 0.4 .
1 7 ALA 3 12 15 9 60.0 0.2 .
1 8 GLY 3 5 6 5 83.3 1.6 >sigma
1 9 HIS 6 11 14 9 64.3 0.5 .
1 10 PRO 5 23 30 15 50.0 -0.4 .
1 11 PHE 7 36 50 20 40.0 -1.0 .
1 12 GLY 3 15 24 8 33.3 -1.4 >sigma
1 13 THR 4 14 13 8 61.5 0.3 .
1 14 THR 4 17 21 13 61.9 0.3 .
1 15 VAL 5 39 47 23 48.9 -0.4 .
1 16 THR 4 24 30 13 43.3 -0.8 .
1 17 ALA 3 25 26 15 57.7 0.1 .
1 18 GLU 5 23 21 14 66.7 0.6 .
1 19 THR 4 34 28 20 71.4 0.9 .
1 20 LEU 7 42 57 27 47.4 -0.5 .
1 21 ARG 7 24 28 16 57.1 0.0 .
1 22 ASN 6 20 23 15 65.2 0.5 .
1 23 THR 4 22 23 15 65.2 0.5 .
1 24 PHE 7 50 67 33 49.3 -0.4 .
1 25 ALA 3 14 14 11 78.6 1.3 >sigma
1 26 PRO 5 13 21 10 47.6 -0.5 .
1 27 LEU 7 43 47 21 44.7 -0.7 .
1 28 THR 4 17 13 7 53.8 -0.2 .
1 29 GLN 7 24 22 11 50.0 -0.4 .
1 30 TRP 10 21 26 12 46.2 -0.6 .
1 31 GLU 5 20 15 13 86.7 1.8 >sigma
1 32 ASP 4 31 29 19 65.5 0.5 .
1 33 LYS 7 40 57 26 45.6 -0.6 .
1 34 TYR 6 41 31 24 77.4 1.3 >sigma
1 35 ARG 7 21 21 16 76.2 1.2 >sigma
1 36 GLN 7 39 34 25 73.5 1.0 >sigma
1 37 LEU 7 52 65 29 44.6 -0.7 .
1 38 ILE 6 30 41 16 39.0 -1.0 >sigma
1 39 MET 6 19 23 15 65.2 0.5 .
1 40 LEU 7 40 55 24 43.6 -0.8 .
1 41 GLY 3 16 25 9 36.0 -1.2 >sigma
1 42 LYS 7 13 14 9 64.3 0.5 .
1 43 GLN 7 20 16 10 62.5 0.4 .
1 44 LEU 7 18 36 9 25.0 -1.9 >sigma
1 45 PRO 5 10 14 6 42.9 -0.8 .
1 46 ALA 3 9 8 6 75.0 1.1 >sigma
1 47 LEU 7 44 46 22 47.8 -0.5 .
1 48 PRO 5 20 27 15 55.6 -0.1 .
1 49 ASP 4 13 14 11 78.6 1.3 >sigma
1 50 GLU 5 20 23 15 65.2 0.5 .
1 51 LEU 7 50 45 28 62.2 0.3 .
1 52 LYS 7 35 44 22 50.0 -0.4 .
1 53 ALA 3 21 14 12 85.7 1.8 >sigma
1 54 GLN 7 25 28 16 57.1 0.0 .
1 55 ALA 3 32 28 22 78.6 1.3 >sigma
1 56 LYS 7 22 11 7 63.6 0.4 .
1 57 GLU 5 18 13 9 69.2 0.8 .
1 58 ILE 6 45 45 23 51.1 -0.3 .
1 59 ALA 3 14 12 7 58.3 0.1 .
1 60 GLY 3 10 9 7 77.8 1.3 >sigma
1 61 CYS 4 19 24 15 62.5 0.4 .
1 62 GLU 5 11 14 8 57.1 0.0 .
1 63 ASN 6 25 23 14 60.9 0.3 .
1 64 ARG 7 20 22 10 45.5 -0.7 .
1 65 VAL 5 51 50 29 58.0 0.1 .
1 66 TRP 10 50 52 19 36.5 -1.2 >sigma
1 67 LEU 7 43 54 24 44.4 -0.7 .
1 68 GLY 3 22 22 16 72.7 1.0 .
1 69 TYR 6 36 39 23 59.0 0.2 .
1 70 THR 4 22 17 13 76.5 1.2 >sigma
1 71 VAL 5 24 29 16 55.2 -0.1 .
1 72 ALA 3 13 17 9 52.9 -0.2 .
1 73 GLU 5 12 8 6 75.0 1.1 >sigma
1 74 ASN 6 17 21 14 66.7 0.6 .
1 75 GLY 3 17 15 12 80.0 1.4 >sigma
1 76 LYS 7 29 32 16 50.0 -0.4 .
1 77 MET 6 36 46 21 45.7 -0.6 .
1 78 HIS 6 18 13 7 53.8 -0.2 .
1 79 PHE 7 44 65 31 47.7 -0.5 .
1 80 PHE 7 35 38 21 55.3 -0.1 .
1 81 GLY 3 16 21 8 38.1 -1.1 >sigma
1 82 ASP 4 38 29 20 69.0 0.7 .
1 83 SER 4 38 29 21 72.4 1.0 .
1 84 GLU 5 25 17 11 64.7 0.5 .
1 85 GLY 3 15 14 7 50.0 -0.4 .
1 86 ARG 7 8 22 7 31.8 -1.5 >sigma
1 87 ILE 6 21 40 14 35.0 -1.3 >sigma
1 88 VAL 5 25 43 19 44.2 -0.7 .
1 89 ARG 7 29 49 23 46.9 -0.6 .
1 90 GLY 3 15 26 12 46.2 -0.6 .
1 91 LEU 7 31 55 23 41.8 -0.9 .
1 92 LEU 7 37 50 26 52.0 -0.3 .
1 93 ALA 3 29 34 22 64.7 0.5 .
1 94 VAL 5 52 56 31 55.4 -0.1 .
1 95 LEU 7 36 67 22 32.8 -1.4 >sigma
1 96 LEU 7 44 58 30 51.7 -0.3 .
1 97 THR 4 27 47 19 40.4 -1.0 .
1 98 ALA 3 28 34 19 55.9 -0.0 .
1 99 VAL 5 36 54 28 51.9 -0.3 .
1 100 GLU 5 12 24 5 20.8 -2.1 >sigma
1 101 GLY 3 15 13 5 38.5 -1.1 >sigma
1 102 LYS 7 21 30 10 33.3 -1.4 >sigma
1 103 THR 4 33 24 18 75.0 1.1 >sigma
1 104 ALA 3 26 35 19 54.3 -0.1 .
1 105 ALA 3 26 24 16 66.7 0.6 .
1 106 GLU 5 19 25 14 56.0 -0.0 .
1 107 LEU 7 46 59 31 52.5 -0.2 .
1 108 GLN 7 48 41 29 70.7 0.9 .
1 109 ALA 3 18 13 10 76.9 1.2 >sigma
1 110 GLN 7 15 13 8 61.5 0.3 .
1 111 SER 4 10 18 7 38.9 -1.0 >sigma
1 112 PRO 5 15 45 12 26.7 -1.8 >sigma
1 113 LEU 7 46 45 26 57.8 0.1 .
1 114 ALA 3 20 22 13 59.1 0.2 .
1 115 LEU 7 45 54 28 51.9 -0.3 .
1 116 PHE 7 57 74 35 47.3 -0.5 .
1 117 ASP 4 23 19 12 63.2 0.4 .
1 118 GLU 5 31 21 14 66.7 0.6 .
1 119 LEU 7 56 60 30 50.0 -0.4 .
1 120 GLY 3 13 15 8 53.3 -0.2 .
1 121 LEU 7 32 65 21 32.3 -1.4 >sigma
1 122 ARG 7 24 35 14 40.0 -1.0 .
1 123 ALA 3 16 16 9 56.3 -0.0 .
1 124 GLN 7 11 11 7 63.6 0.4 .
1 125 LEU 7 23 40 13 32.5 -1.4 >sigma
1 126 SER 4 8 18 6 33.3 -1.4 >sigma
1 127 ALA 3 6 10 6 60.0 0.2 .
1 128 SER 4 9 14 7 50.0 -0.4 .
1 129 ARG 7 9 29 7 24.1 -1.9 >sigma
1 130 SER 4 21 17 12 70.6 0.8 .
1 131 GLN 7 19 14 11 78.6 1.3 >sigma
1 132 GLY 3 13 14 10 71.4 0.9 .
1 133 LEU 7 51 42 29 69.0 0.8 .
1 134 ASN 6 29 19 16 84.2 1.7 >sigma
1 135 ALA 3 20 20 14 70.0 0.8 .
1 136 LEU 7 25 41 15 36.6 -1.2 >sigma
1 137 SER 4 33 30 23 76.7 1.2 >sigma
1 138 GLU 5 27 23 16 69.6 0.8 .
1 139 ALA 3 27 20 16 80.0 1.4 >sigma
1 140 ILE 6 30 60 23 38.3 -1.1 >sigma
1 141 ILE 6 50 43 26 60.5 0.2 .
1 142 ALA 3 23 21 15 71.4 0.9 .
1 143 ALA 3 25 20 14 70.0 0.8 .
1 144 THR 4 40 47 30 63.8 0.4 .
1 145 LYS 7 35 33 26 78.8 1.3 >sigma
1 146 GLN 7 21 17 14 82.4 1.6 >sigma
1 147 VAL 5 30 32 21 65.6 0.5 .
1 148 LEU 7 22 35 18 51.4 -0.3 .
1 149 GLU 5 12 8 7 87.5 1.9 >sigma
stop_
save_
Contact the webmaster for help, if required. Thursday, July 4, 2024 9:35:43 PM GMT (wattos1)