NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage position program type subtype subsubtype
648759 6yfy 50202 cing 1-original 6 XPLOR/CNS distance general distance ambi


!>>>>>>>>>>>>>>>>>>>>>>
!<<<<<<<<<<<<<<<<<<<<<<

! DISTANCE restraints

! 2. teixobactin - Lipid II distance restraints 

!<<<<<<<<<<<<<<<<<<<<<<





! Lipid II - sugar
!from PARIS 600ms at 950Mhz 
!Unambiguous
assign (resid 7 and name C1 and segid C) (resid 6 and name C2 and segid C) 4.5 3.0 1.5
assign (resid 7 and name C1 and segid C) (resid 6 and name C9 and segid C) 4.5 3.0 1.5
assign (resid 7 and name C2 and segid C) (resid 6 and name C1 and segid C) 4.5 3.0 1.5
assign (resid 7 and name C2 and segid C) (resid 6 and name C6 and segid C) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid C) (resid 6 and name C1 and segid C) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid C) (resid 6 and name C2 and segid C) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid C) (resid 6 and name C6 and segid C) 4.5 3.0 1.5
assign (resid 7 and name C6 and segid C) (resid 6 and name C2 and segid C) 4.5 3.0 1.5

!Ambiguous
assign (resid 7 and name C4 and segid C) (resid 7 and name C1 and segid C) 4.5 3.0 1.5
or (resid 6 and name C4 and segid C) (resid 7 and name C1 and segid C)
assign (resid 7 and name C5 and segid C) (resid 6 and name C11 and segid C) 4.5 3.0 1.5
or (resid 7 and name C5 and segid C) (resid 6 and name C3 and segid C)
assign (resid 7 and name C4 and segid C) (resid 7 and name C8 and segid C) 4.5 3.0 1.5
or (resid 7 and name C4 and segid C) (resid 6 and name C8 and segid C)
or (resid 6 and name C4 and segid C) (resid 7 and name C8 and segid C)
or (resid 6 and name C4 and segid C) (resid 6 and name C8 and segid C)
assign (resid 6 and name C4 and segid C) (resid 6 and name C1 and segid C) 4.5 3.0 1.5
or (resid 7 and name C4 and segid C) (resid 6 and name C1 and segid C)
assign (resid 6 and name C4 and segid C) (resid 6 and name C9 and segid C) 4.5 3.0 1.5
or (resid 7 and name C4 and segid C) (resid 6 and name C9 and segid C)
assign (resid 6 and name C3 and segid C) (resid 7 and name C1 and segid C) 4.5 3.0 1.5
or (resid 6 and name C11 and segid C) (resid 7 and name C1 and segid C)
assign (resid 6 and name C3 and segid C) (resid 7 and name C2 and segid C) 4.5 3.0 1.5
or (resid 6 and name C11 and segid C) (resid 7 and name C2 and segid C)
assign (resid 6 and name C3 and segid C) (resid 7 and name C6 and segid C) 4.5 3.0 1.5
or (resid 6 and name C11 and segid C) (resid 7 and name C6 and segid C)
assign (resid 7 and name C7 and segid C) (resid 6 and name C11 and segid C) 4.5 3.0 1.5
or (resid 7 and name C7 and segid C) (resid 6 and name C3 and segid C)


!Lipid II sugar-pentapeptide contacts
!from PARIS 600ms at 950Mhz 

assign (resid 1 and name CA and segid C) (resid 6 and name C9 and segid C) 4.5 3.0 1.5
assign (resid 1 and name CA and segid C) (resid 6 and name C8 and segid C) 4.5 3.0 1.5
or (resid 1 and name CA and segid C) (resid 7 and name C8 and segid C)

!Teixo-Lipid II contacts
!from PARIS 600ms at 950Mhz 

assign (resid 10 and name CD2 and segid A) (resid 6 and name C1 and segid C) 6.5 5.5 1.5
assign (resid 9 and name CB and segid A) (resid 6 and name C1 and segid C) 6.5 5.5 1.5
assign (resid 10 and name CD2 and segid A) (resid 7 and name C5 and segid C) 7.5 5.5 1.5
assign (resid 9 and name CB and segid A) (resid 6 and name C6 and segid C) 6.5 5.5 1.5
assign (resid 10 and name CD2 and segid A) (resid 6 and name C11 and segid C) 6.5 5.5 1.5
assign (resid 9 and name CA and segid A) (resid 6 and name C1 and segid C) 6.5 5.5 1.5
or  (resid 10 and name CA and segid A) (resid 6 and name C1 and segid C)
assign (resid 9 and name CA and segid A) (resid 6 and name C5 and segid C) 6.5 5.5 1.5
or (resid 10 and name CA and segid A) (resid 6 and name C5 and segid C)
or (resid 9 and name CA and segid A) (resid 7 and name C3 and segid C)
or (resid 10 and name CA and segid A) (resid 7 and name C3 and segid C)
assign (resid 9 and name CA and segid A) (resid 6 and name C6 and segid C) 6.5 5.5 1.5
or (resid 10 and name CA and segid A) (resid 6 and name C6 and segid C)
assign (resid 9 and name CA and segid A) (resid 6 and name C4 and segid C) 6.5 5.5 1.5
or (resid 10 and name CA and segid A) (resid 6 and name C4 and segid C)
or (resid 9 and name CA and segid A) (resid 7 and name C4 and segid C)
or (resid 10 and name CA and segid A) (resid 7 and name C4 and segid C)
assign (resid 9 and name CA and segid A) (resid 6 and name C3 and segid C) 6.5 5.5 1.5
or (resid 10 and name CA and segid A) (resid 6 and name C9 and segid C)
or (resid 9 and name CA and segid A) (resid 6 and name C3 and segid C)
or (resid 10 and name CA and segid A) (resid 6 and name C9 and segid C)
assign (resid 9 and name CB and segid A) (resid 6 and name C3 and segid C) 6.5 5.5 1.5
or (resid 9 and name CB and segid A) (resid 6 and name C9 and segid C)
assign (resid 9 and name CB and segid A) (resid 6 and name C3 and segid C) 6.5 5.5 1.5
or (resid 9 and name CB and segid A) (resid 6 and name C9 and segid C)
assign (resid 9 and name CB and segid A) (resid 6 and name C4 and segid C) 6.5 5.5 1.5
or (resid 9 and name CB and segid A) (resid 7 and name C4 and segid C)
assign (resid 10 and name CD2 and segid A) (resid 6 and name C4 and segid C) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid A) (resid 7 and name C4 and segid C)
assign (resid 10 and name CD2 and segid A) (resid 6 and name C3 and segid C) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid A) (resid 6 and name C9 and segid C)
assign (resid 10 and name CD2 and segid A) (resid 6 and name C5 and segid C) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid A) (resid 7 and name C3 and segid C)
assign (resid 9 and name CA and segid A) (resid 6 and name C8 and segid C) 7.5 5.5 1.5
or (resid 10 and name CA and segid A) (resid 6 and name C8 and segid C)
or (resid 9 and name CA and segid A) (resid 7 and name C8 and segid C)
or (resid 10 and name CA and segid A) (resid 7 and name C8 and segid C)
assign (resid 9 and name CA and segid A) (resid 6 and name C11 and segid C) 7.5 5.5 1.5
or  (resid 10 and name CA and segid A) (resid 6 and name C11 and segid C)

!PPI
assign (segid "A" and resid  8 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "A" and resid  8 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  9 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  9 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  10 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  10 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  11 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  11 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "A" and resid  8 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "A" and resid  8 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  9 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  9 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  10 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  10 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  11 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  11 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "A" and resid  8 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "A" and resid  8 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  9 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  9 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  10 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  10 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  11 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  11 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "A" and resid  8 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "A" and resid  8 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  9 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  9 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  10 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  10 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "A" and resid  11 and name HN) (segid "C" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  11 and name   HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3))

!PPi to include residue 9 / second Pi with certainty

assign (segid "A" and resid  9 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  10 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "A" and resid  10 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "A" and resid  11 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 

assign (segid "A" and resid  9 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  10 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "A" and resid  10 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "A" and resid  11 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 

assign (segid "A" and resid  9 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  10 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "A" and resid  10 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "A" and resid  11 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 

assign (segid "A" and resid  9 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "A" and resid  10 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "A" and resid  10 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "A" and resid  11 and name HN) (segid "C" and resid 9 and (name O1 or name O2 or name O3)) 



!assign (resid 11 and name HN and segid A) (resid 8 and name P and segid C) 4.0 1.5 2.0
!or (resid 10 and name HN and segid A) (resid 8 and name P and segid C)
!or (resid 9 and name HN and segid A) (resid 8 and name P and segid C)
!or (resid 8 and name HN and segid A) (resid 8 and name P and segid C)

!assign (resid 11 and name HN and segid A) (resid 8 and name P and segid C) 4.0 1.5 2.0
!or (resid 10 and name HN and segid A) (resid 8 and name P and segid C)
!or (resid 9 and name HN and segid A) (resid 8 and name P and segid C)
!or (resid 8 and name HN and segid A) (resid 8 and name P and segid C)

!assign (resid 11 and name HN and segid A) (resid 9 and name P and segid C) 4.0 1.5 2.0
!or (resid 10 and name HN and segid A) (resid 9 and name P and segid C)
!or (resid 9 and name HN and segid A) (resid 9 and name P and segid C)
!or (resid 8 and name HN and segid A) (resid 9 and name P and segid C)

!assign (resid 11 and name HN and segid A) (resid 9 and name P and segid C) 4.0 1.5 2.0
!or (resid 10 and name HN and segid A) (resid 9 and name P and segid C)
!or (resid 9 and name HN and segid A) (resid 9 and name P and segid C)
!or (resid 8 and name HN and segid A) (resid 9 and name P and segid C)


!>>>>>>>>>>>>>>>>>>>>>>
!<<<<<<<<<<<<<<<<<<<<<<

! SECOND PAIR (B + D)

!<<<<<<<<<<<<<<<<<<<<<<
!>>>>>>>>>>>>>>>>>>>>>>


! Lipid II - sugar
!from PARIS 600ms at 950Mhz 
!Unambiguous
assign (resid 7 and name C1 and segid D) (resid 6 and name C2 and segid D) 4.5 3.0 1.5
assign (resid 7 and name C1 and segid D) (resid 6 and name C9 and segid D) 4.5 3.0 1.5
assign (resid 7 and name C2 and segid D) (resid 6 and name C1 and segid D) 4.5 3.0 1.5
assign (resid 7 and name C2 and segid D) (resid 6 and name C6 and segid D) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid D) (resid 6 and name C1 and segid D) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid D) (resid 6 and name C2 and segid D) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid D) (resid 6 and name C6 and segid D) 4.5 3.0 1.5
assign (resid 7 and name C6 and segid D) (resid 6 and name C2 and segid D) 4.5 3.0 1.5

!Ambiguous
assign (resid 7 and name C4 and segid D) (resid 7 and name C1 and segid D) 4.5 3.0 1.5
or (resid 6 and name C4 and segid D) (resid 7 and name C1 and segid D)
assign (resid 7 and name C5 and segid D) (resid 6 and name C11 and segid D) 4.5 3.0 1.5
or (resid 7 and name C5 and segid D) (resid 6 and name C3 and segid D)
assign (resid 7 and name C4 and segid D) (resid 7 and name C8 and segid D) 4.5 3.0 1.5
or (resid 7 and name C4 and segid D) (resid 6 and name C8 and segid D)
or (resid 6 and name C4 and segid D) (resid 7 and name C8 and segid D)
or (resid 6 and name C4 and segid D) (resid 6 and name C8 and segid D)
assign (resid 6 and name C4 and segid D) (resid 6 and name C1 and segid D) 4.5 3.0 1.5
or (resid 7 and name C4 and segid D) (resid 6 and name C1 and segid D)
assign (resid 6 and name C4 and segid D) (resid 6 and name C9 and segid D) 4.5 3.0 1.5
or (resid 7 and name C4 and segid D) (resid 6 and name C9 and segid D)
assign (resid 6 and name C3 and segid D) (resid 7 and name C1 and segid D) 4.5 3.0 1.5
or (resid 6 and name C11 and segid D) (resid 7 and name C1 and segid D)
assign (resid 6 and name C3 and segid D) (resid 7 and name C2 and segid D) 4.5 3.0 1.5
or (resid 6 and name C11 and segid D) (resid 7 and name C2 and segid D)
assign (resid 6 and name C3 and segid D) (resid 7 and name C6 and segid D) 4.5 3.0 1.5
or (resid 6 and name C11 and segid D) (resid 7 and name C6 and segid D)
assign (resid 7 and name C7 and segid D) (resid 6 and name C11 and segid D) 4.5 3.0 1.5
or (resid 7 and name C7 and segid D) (resid 6 and name C3 and segid D)


!Lipid II sugar-pentapeptide contacts
!from PARIS 600ms at 950Mhz 

assign (resid 1 and name CA and segid D) (resid 6 and name C9 and segid D) 4.5 3.0 1.5
assign (resid 1 and name CA and segid D) (resid 6 and name C8 and segid D) 4.5 3.0 1.5
or (resid 1 and name CA and segid D) (resid 7 and name C8 and segid D)

!Teixo-Lipid II contacts
!from PARIS 600ms at 950Mhz 

assign (resid 10 and name CD2 and segid B) (resid 6 and name C1 and segid D) 6.5 5.5 1.5
assign (resid 9 and name CB and segid B) (resid 6 and name C1 and segid D) 6.5 5.5 1.5
assign (resid 10 and name CD2 and segid B) (resid 7 and name C5 and segid D) 7.5 5.5 1.5
assign (resid 9 and name CB and segid B) (resid 6 and name C6 and segid D) 6.5 5.5 1.5
assign (resid 10 and name CD2 and segid B) (resid 6 and name C11 and segid D) 6.5 5.5 1.5
assign (resid 9 and name CA and segid B) (resid 6 and name C1 and segid D) 6.5 5.5 1.5
or  (resid 10 and name CA and segid B) (resid 6 and name C1 and segid D)
assign (resid 9 and name CA and segid B) (resid 6 and name C5 and segid D) 6.5 5.5 1.5
or (resid 10 and name CA and segid B) (resid 6 and name C5 and segid D)
or (resid 9 and name CA and segid B) (resid 7 and name C3 and segid D)
or (resid 10 and name CA and segid B) (resid 7 and name C3 and segid D)
assign (resid 9 and name CA and segid B) (resid 6 and name C6 and segid D) 6.5 5.5 1.5
or (resid 10 and name CA and segid B) (resid 6 and name C6 and segid D)
assign (resid 9 and name CA and segid B) (resid 6 and name C4 and segid D) 6.5 5.5 1.5
or (resid 10 and name CA and segid B) (resid 6 and name C4 and segid D)
or (resid 9 and name CA and segid B) (resid 7 and name C4 and segid D)
or (resid 10 and name CA and segid B) (resid 7 and name C4 and segid D)
assign (resid 9 and name CA and segid B) (resid 6 and name C3 and segid D) 6.5 5.5 1.5
or (resid 10 and name CA and segid B) (resid 6 and name C9 and segid D)
or (resid 9 and name CA and segid B) (resid 6 and name C3 and segid D)
or (resid 10 and name CA and segid B) (resid 6 and name C9 and segid D)
assign (resid 9 and name CB and segid B) (resid 6 and name C3 and segid D) 6.5 5.5 1.5
or (resid 9 and name CB and segid B) (resid 6 and name C9 and segid D)
assign (resid 9 and name CB and segid B) (resid 6 and name C3 and segid D) 6.5 5.5 1.5
or (resid 9 and name CB and segid B) (resid 6 and name C9 and segid D)
assign (resid 9 and name CB and segid B) (resid 6 and name C4 and segid D) 6.5 5.5 1.5
or (resid 9 and name CB and segid B) (resid 7 and name C4 and segid D)
assign (resid 10 and name CD2 and segid B) (resid 6 and name C4 and segid D) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid B) (resid 7 and name C4 and segid D)
assign (resid 10 and name CD2 and segid B) (resid 6 and name C3 and segid D) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid B) (resid 6 and name C9 and segid D)
assign (resid 10 and name CD2 and segid B) (resid 6 and name C5 and segid D) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid B) (resid 7 and name C3 and segid D)
assign (resid 9 and name CA and segid B) (resid 6 and name C8 and segid D) 7.5 5.5 1.5
or (resid 10 and name CA and segid B) (resid 6 and name C8 and segid D)
or (resid 9 and name CA and segid B) (resid 7 and name C8 and segid D)
or (resid 10 and name CA and segid B) (resid 7 and name C8 and segid D)
assign (resid 9 and name CA and segid B) (resid 6 and name C11 and segid D) 7.5 5.5 1.5
or  (resid 10 and name CA and segid B) (resid 6 and name C11 and segid D)

!PPI
assign (segid "B" and resid  8 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "B" and resid  8 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  9 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  9 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  10 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  10 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  11 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  11 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "B" and resid  8 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "B" and resid  8 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  9 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  9 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  10 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  10 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  11 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  11 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "B" and resid  8 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "B" and resid  8 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  9 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  9 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  10 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  10 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  11 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  11 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "B" and resid  8 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "B" and resid  8 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  9 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  9 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  10 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  10 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "B" and resid  11 and name HN) (segid "D" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  11 and name   HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "B" and resid  9 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  10 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "B" and resid  10 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "B" and resid  11 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "B" and resid  9 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  10 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "B" and resid  10 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "B" and resid  11 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "B" and resid  9 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  10 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "B" and resid  10 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "B" and resid  11 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "B" and resid  9 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "B" and resid  10 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "B" and resid  10 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "B" and resid  11 and name HN) (segid "D" and resid 9 and (name O1 or name O2 or name O3))


!! ILE2/6 with TPL. Restraints to get the hydrophobic sidechains and TPL pointing into the same direction, as shown by T2-edited H(H)C experiment 

assign (resid 6 and name CD1 and segid B) (resid 10 and name C3 and segid D) 7.5 7.5 1.0
assign (resid 6 and name CD1 and segid B) (resid 11 and name C3 and segid D) 6 6 1.0
assign (resid 6 and name CD1 and segid B) (resid 12 and name C3 and segid D) 9 9 2.0
assign (resid 6 and name CD1 and segid B) (resid 10 and name C3 and segid D) 7.5 7.5 1.0
assign (resid 6 and name CD1 and segid B) (resid 11 and name C3 and segid D) 6 6 1.0
assign (resid 6 and name CD1 and segid B) (resid 12 and name C3 and segid D) 9 9 2.0


assign (resid 6 and name CD1 and segid F) (resid 10 and name C3 and segid H) 7.5 7.5 1.0
assign (resid 6 and name CD1 and segid F) (resid 11 and name C3 and segid H) 6 6 1.0
assign (resid 6 and name CD1 and segid F) (resid 12 and name C3 and segid H) 9 9 2.0
assign (resid 6 and name CD1 and segid F) (resid 10 and name C3 and segid H) 7.5 7.5 1.0
assign (resid 6 and name CD1 and segid F) (resid 11 and name C3 and segid H) 6 6 1.0
assign (resid 6 and name CD1 and segid F) (resid 12 and name C3 and segid H) 9 9 2.0

assign (resid 6 and name CD1 and segid A) (resid 10 and name C3 and segid C) 7.5 7.5 1.0
assign (resid 6 and name CD1 and segid A) (resid 11 and name C3 and segid C) 6 6 1.0
assign (resid 6 and name CD1 and segid A) (resid 12 and name C3 and segid C) 9 9 2.0
assign (resid 6 and name CD1 and segid A) (resid 10 and name C3 and segid C) 7.5 7.5 1.0
assign (resid 6 and name CD1 and segid A) (resid 11 and name C3 and segid C) 6 6 1.0
assign (resid 6 and name CD1 and segid A) (resid 12 and name C3 and segid C) 9 9 2.0

assign (resid 6 and name CD1 and segid E) (resid 10 and name C3 and segid G) 7.5 7.5 1.0
assign (resid 6 and name CD1 and segid E) (resid 11 and name C3 and segid G) 6 6 1.0
assign (resid 6 and name CD1 and segid E) (resid 12 and name C3 and segid G) 9 9 2.0
assign (resid 6 and name CD1 and segid E) (resid 10 and name C3 and segid G) 7.5 7.5 1.0
assign (resid 6 and name CD1 and segid E) (resid 11 and name C3 and segid G) 6 6 1.0
assign (resid 6 and name CD1 and segid E) (resid 12 and name C3 and segid G) 9 9 2.0

!>>>>>>>>>>>>>>>>>>>>>>
!<<<<<<<<<<<<<<<<<<<<<<

! !  ! PAIRS E - G & F - H

!<<<<<<<<<<<<<<<<<<<<<<
!>>>>>>>>>>>>>>>>>>>>>>


! Lipid II - sugar
!from PARIS 600ms at 950Mhz 
!Unambiguous
assign (resid 7 and name C1 and segid G) (resid 6 and name C2 and segid G) 4.5 3.0 1.5
assign (resid 7 and name C1 and segid G) (resid 6 and name C9 and segid G) 4.5 3.0 1.5
assign (resid 7 and name C2 and segid G) (resid 6 and name C1 and segid G) 4.5 3.0 1.5
assign (resid 7 and name C2 and segid G) (resid 6 and name C6 and segid G) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid G) (resid 6 and name C1 and segid G) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid G) (resid 6 and name C2 and segid G) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid G) (resid 6 and name C6 and segid G) 4.5 3.0 1.5
assign (resid 7 and name C6 and segid G) (resid 6 and name C2 and segid G) 4.5 3.0 1.5

!Ambiguous
assign (resid 7 and name C4 and segid G) (resid 7 and name C1 and segid G) 4.5 3.0 1.5
or (resid 6 and name C4 and segid G) (resid 7 and name C1 and segid G)
assign (resid 7 and name C5 and segid G) (resid 6 and name C11 and segid G) 4.5 3.0 1.5
or (resid 7 and name C5 and segid G) (resid 6 and name C3 and segid G)
assign (resid 7 and name C4 and segid G) (resid 7 and name C8 and segid G) 4.5 3.0 1.5
or (resid 7 and name C4 and segid G) (resid 6 and name C8 and segid G)
or (resid 6 and name C4 and segid G) (resid 7 and name C8 and segid G)
or (resid 6 and name C4 and segid G) (resid 6 and name C8 and segid G)
assign (resid 6 and name C4 and segid G) (resid 6 and name C1 and segid G) 4.5 3.0 1.5
or (resid 7 and name C4 and segid G) (resid 6 and name C1 and segid G)
assign (resid 6 and name C4 and segid G) (resid 6 and name C9 and segid G) 4.5 3.0 1.5
or (resid 7 and name C4 and segid G) (resid 6 and name C9 and segid G)
assign (resid 6 and name C3 and segid G) (resid 7 and name C1 and segid G) 4.5 3.0 1.5
or (resid 6 and name C11 and segid G) (resid 7 and name C1 and segid G)
assign (resid 6 and name C3 and segid G) (resid 7 and name C2 and segid G) 4.5 3.0 1.5
or (resid 6 and name C11 and segid G) (resid 7 and name C2 and segid G)
assign (resid 6 and name C3 and segid G) (resid 7 and name C6 and segid G) 4.5 3.0 1.5
or (resid 6 and name C11 and segid G) (resid 7 and name C6 and segid G)
assign (resid 7 and name C7 and segid G) (resid 6 and name C11 and segid G) 4.5 3.0 1.5
or (resid 7 and name C7 and segid G) (resid 6 and name C3 and segid G)


!Lipid II sugar-pentapeptide contacts
!from PARIS 600ms at 950Mhz 

assign (resid 1 and name CA and segid G) (resid 6 and name C9 and segid G) 4.5 3.0 1.5
assign (resid 1 and name CA and segid G) (resid 6 and name C8 and segid G) 4.5 3.0 1.5
or (resid 1 and name CA and segid G) (resid 7 and name C8 and segid G)

!Teixo-Lipid II contacts
!from PARIS 600ms at 950Mhz 

assign (resid 10 and name CD2 and segid E) (resid 6 and name C1 and segid G) 6.5 5.5 1.5
assign (resid 9 and name CB and segid E) (resid 6 and name C1 and segid G) 6.5 5.5 1.5
assign (resid 10 and name CD2 and segid E) (resid 7 and name C5 and segid G) 7.5 5.5 1.5
assign (resid 9 and name CB and segid E) (resid 6 and name C6 and segid G) 6.5 5.5 1.5
assign (resid 10 and name CD2 and segid E) (resid 6 and name C11 and segid G) 6.5 5.5 1.5
assign (resid 9 and name CA and segid E) (resid 6 and name C1 and segid G) 6.5 5.5 1.5
or  (resid 10 and name CA and segid E) (resid 6 and name C1 and segid G)
assign (resid 9 and name CA and segid E) (resid 6 and name C5 and segid G) 6.5 5.5 1.5
or (resid 10 and name CA and segid E) (resid 6 and name C5 and segid G)
or (resid 9 and name CA and segid E) (resid 7 and name C3 and segid G)
or (resid 10 and name CA and segid E) (resid 7 and name C3 and segid G)
assign (resid 9 and name CA and segid E) (resid 6 and name C6 and segid G) 6.5 5.5 1.5
or (resid 10 and name CA and segid E) (resid 6 and name C6 and segid G)
assign (resid 9 and name CA and segid E) (resid 6 and name C4 and segid G) 6.5 5.5 1.5
or (resid 10 and name CA and segid E) (resid 6 and name C4 and segid G)
or (resid 9 and name CA and segid E) (resid 7 and name C4 and segid G)
or (resid 10 and name CA and segid E) (resid 7 and name C4 and segid G)
assign (resid 9 and name CA and segid E) (resid 6 and name C3 and segid G) 6.5 5.5 1.5
or (resid 10 and name CA and segid E) (resid 6 and name C9 and segid G)
or (resid 9 and name CA and segid E) (resid 6 and name C3 and segid G)
or (resid 10 and name CA and segid E) (resid 6 and name C9 and segid G)
assign (resid 9 and name CB and segid E) (resid 6 and name C3 and segid G) 6.5 5.5 1.5
or (resid 9 and name CB and segid E) (resid 6 and name C9 and segid G)
assign (resid 9 and name CB and segid E) (resid 6 and name C3 and segid G) 6.5 5.5 1.5
or (resid 9 and name CB and segid E) (resid 6 and name C9 and segid G)
assign (resid 9 and name CB and segid E) (resid 6 and name C4 and segid G) 6.5 5.5 1.5
or (resid 9 and name CB and segid E) (resid 7 and name C4 and segid G)
assign (resid 10 and name CD2 and segid E) (resid 6 and name C4 and segid G) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid E) (resid 7 and name C4 and segid G)
assign (resid 10 and name CD2 and segid E) (resid 6 and name C3 and segid G) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid E) (resid 6 and name C9 and segid G)
assign (resid 10 and name CD2 and segid E) (resid 6 and name C5 and segid G) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid E) (resid 7 and name C3 and segid G)
assign (resid 9 and name CA and segid E) (resid 6 and name C8 and segid G) 7.5 5.5 1.5
or (resid 10 and name CA and segid E) (resid 6 and name C8 and segid G)
or (resid 9 and name CA and segid E) (resid 7 and name C8 and segid G)
or (resid 10 and name CA and segid E) (resid 7 and name C8 and segid G)
assign (resid 9 and name CA and segid E) (resid 6 and name C11 and segid G) 7.5 5.5 1.5
or  (resid 10 and name CA and segid E) (resid 6 and name C11 and segid G)

!PPI
assign (segid "E" and resid  8 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "E" and resid  8 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  9 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  9 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  10 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  10 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  11 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  11 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "E" and resid  8 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "E" and resid  8 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  9 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  9 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  10 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  10 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  11 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  11 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "E" and resid  8 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "E" and resid  8 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  9 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  9 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  10 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  10 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  11 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  11 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "E" and resid  8 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "E" and resid  8 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  9 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  9 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  10 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  10 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "E" and resid  11 and name HN) (segid "G" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  11 and name   HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3))

!PPi to include residue 9 / second Pi with certainty

assign (segid "E" and resid  9 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  10 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "E" and resid  10 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "E" and resid  11 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 

assign (segid "E" and resid  9 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  10 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "E" and resid  10 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "E" and resid  11 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 

assign (segid "E" and resid  9 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  10 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "E" and resid  10 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "E" and resid  11 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 

assign (segid "E" and resid  9 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "E" and resid  10 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "E" and resid  10 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 
!or (segid "E" and resid  11 and name HN) (segid "G" and resid 9 and (name O1 or name O2 or name O3)) 



!assign (resid 11 and name HN and segid E) (resid 8 and name P and segid G) 4.0 1.5 2.0
!or (resid 10 and name HN and segid E) (resid 8 and name P and segid G)
!or (resid 9 and name HN and segid E) (resid 8 and name P and segid G)
!or (resid 8 and name HN and segid E) (resid 8 and name P and segid G)

!assign (resid 11 and name HN and segid E) (resid 8 and name P and segid G) 4.0 1.5 2.0
!or (resid 10 and name HN and segid E) (resid 8 and name P and segid G)
!or (resid 9 and name HN and segid E) (resid 8 and name P and segid G)
!or (resid 8 and name HN and segid E) (resid 8 and name P and segid G)

!assign (resid 11 and name HN and segid E) (resid 9 and name P and segid G) 4.0 1.5 2.0
!or (resid 10 and name HN and segid E) (resid 9 and name P and segid G)
!or (resid 9 and name HN and segid E) (resid 9 and name P and segid G)
!or (resid 8 and name HN and segid E) (resid 9 and name P and segid G)

!assign (resid 11 and name HN and segid E) (resid 9 and name P and segid G) 4.0 1.5 2.0
!or (resid 10 and name HN and segid E) (resid 9 and name P and segid G)
!or (resid 9 and name HN and segid E) (resid 9 and name P and segid G)
!or (resid 8 and name HN and segid E) (resid 9 and name P and segid G)


!>>>>>>>>>>>>>>>>>>>>>>
!<<<<<<<<<<<<<<<<<<<<<<

! SECOND PAIR (F + H)

!<<<<<<<<<<<<<<<<<<<<<<


! Lipid II - sugar
!from PARIS 600ms at 950Mhz 
!Unambiguous
assign (resid 7 and name C1 and segid H) (resid 6 and name C2 and segid H) 4.5 3.0 1.5
assign (resid 7 and name C1 and segid H) (resid 6 and name C9 and segid H) 4.5 3.0 1.5
assign (resid 7 and name C2 and segid H) (resid 6 and name C1 and segid H) 4.5 3.0 1.5
assign (resid 7 and name C2 and segid H) (resid 6 and name C6 and segid H) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid H) (resid 6 and name C1 and segid H) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid H) (resid 6 and name C2 and segid H) 4.5 3.0 1.5
assign (resid 7 and name C5 and segid H) (resid 6 and name C6 and segid H) 4.5 3.0 1.5
assign (resid 7 and name C6 and segid H) (resid 6 and name C2 and segid H) 4.5 3.0 1.5

!Ambiguous
assign (resid 7 and name C4 and segid H) (resid 7 and name C1 and segid H) 4.5 3.0 1.5
or (resid 6 and name C4 and segid H) (resid 7 and name C1 and segid H)
assign (resid 7 and name C5 and segid H) (resid 6 and name C11 and segid H) 4.5 3.0 1.5
or (resid 7 and name C5 and segid H) (resid 6 and name C3 and segid H)
assign (resid 7 and name C4 and segid H) (resid 7 and name C8 and segid H) 4.5 3.0 1.5
or (resid 7 and name C4 and segid H) (resid 6 and name C8 and segid H)
or (resid 6 and name C4 and segid H) (resid 7 and name C8 and segid H)
or (resid 6 and name C4 and segid H) (resid 6 and name C8 and segid H)
assign (resid 6 and name C4 and segid H) (resid 6 and name C1 and segid H) 4.5 3.0 1.5
or (resid 7 and name C4 and segid H) (resid 6 and name C1 and segid H)
assign (resid 6 and name C4 and segid H) (resid 6 and name C9 and segid H) 4.5 3.0 1.5
or (resid 7 and name C4 and segid H) (resid 6 and name C9 and segid H)
assign (resid 6 and name C3 and segid H) (resid 7 and name C1 and segid H) 4.5 3.0 1.5
or (resid 6 and name C11 and segid H) (resid 7 and name C1 and segid H)
assign (resid 6 and name C3 and segid H) (resid 7 and name C2 and segid H) 4.5 3.0 1.5
or (resid 6 and name C11 and segid H) (resid 7 and name C2 and segid H)
assign (resid 6 and name C3 and segid H) (resid 7 and name C6 and segid H) 4.5 3.0 1.5
or (resid 6 and name C11 and segid H) (resid 7 and name C6 and segid H)
assign (resid 7 and name C7 and segid H) (resid 6 and name C11 and segid H) 4.5 3.0 1.5
or (resid 7 and name C7 and segid H) (resid 6 and name C3 and segid H)


!Lipid II sugar-pentapeptide contacts
!from PARIS 600ms at 950Mhz 

assign (resid 1 and name CA and segid H) (resid 6 and name C9 and segid H) 4.5 3.0 1.5
assign (resid 1 and name CA and segid H) (resid 6 and name C8 and segid H) 4.5 3.0 1.5
or (resid 1 and name CA and segid H) (resid 7 and name C8 and segid H)

!Teixo-Lipid II contacts
!from PARIS 600ms at 950Mhz 

assign (resid 10 and name CD2 and segid F) (resid 6 and name C1 and segid H) 6.5 5.5 1.5
assign (resid 9 and name CB and segid F) (resid 6 and name C1 and segid H) 6.5 5.5 1.5
assign (resid 10 and name CD2 and segid F) (resid 7 and name C5 and segid H) 7.5 5.5 1.5
assign (resid 9 and name CB and segid F) (resid 6 and name C6 and segid H) 6.5 5.5 1.5
assign (resid 10 and name CD2 and segid F) (resid 6 and name C11 and segid H) 6.5 5.5 1.5
assign (resid 9 and name CA and segid F) (resid 6 and name C1 and segid H) 6.5 5.5 1.5
or  (resid 10 and name CA and segid F) (resid 6 and name C1 and segid H)
assign (resid 9 and name CA and segid F) (resid 6 and name C5 and segid H) 6.5 5.5 1.5
or (resid 10 and name CA and segid F) (resid 6 and name C5 and segid H)
or (resid 9 and name CA and segid F) (resid 7 and name C3 and segid H)
or (resid 10 and name CA and segid F) (resid 7 and name C3 and segid H)
assign (resid 9 and name CA and segid F) (resid 6 and name C6 and segid H) 6.5 5.5 1.5
or (resid 10 and name CA and segid F) (resid 6 and name C6 and segid H)
assign (resid 9 and name CA and segid F) (resid 6 and name C4 and segid H) 6.5 5.5 1.5
or (resid 10 and name CA and segid F) (resid 6 and name C4 and segid H)
or (resid 9 and name CA and segid F) (resid 7 and name C4 and segid H)
or (resid 10 and name CA and segid F) (resid 7 and name C4 and segid H)
assign (resid 9 and name CA and segid F) (resid 6 and name C3 and segid H) 6.5 5.5 1.5
or (resid 10 and name CA and segid F) (resid 6 and name C9 and segid H)
or (resid 9 and name CA and segid F) (resid 6 and name C3 and segid H)
or (resid 10 and name CA and segid F) (resid 6 and name C9 and segid H)
assign (resid 9 and name CB and segid F) (resid 6 and name C3 and segid H) 6.5 5.5 1.5
or (resid 9 and name CB and segid F) (resid 6 and name C9 and segid H)
assign (resid 9 and name CB and segid F) (resid 6 and name C3 and segid H) 6.5 5.5 1.5
or (resid 9 and name CB and segid F) (resid 6 and name C9 and segid H)
assign (resid 9 and name CB and segid F) (resid 6 and name C4 and segid H) 6.5 5.5 1.5
or (resid 9 and name CB and segid F) (resid 7 and name C4 and segid H)
assign (resid 10 and name CD2 and segid F) (resid 6 and name C4 and segid H) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid F) (resid 7 and name C4 and segid H)
assign (resid 10 and name CD2 and segid F) (resid 6 and name C3 and segid H) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid F) (resid 6 and name C9 and segid H)
assign (resid 10 and name CD2 and segid F) (resid 6 and name C5 and segid H) 6.5 5.5 1.5
or (resid 10 and name CD2 and segid F) (resid 7 and name C3 and segid H)
assign (resid 9 and name CA and segid F) (resid 6 and name C8 and segid H) 7.5 5.5 1.5
or (resid 10 and name CA and segid F) (resid 6 and name C8 and segid H)
or (resid 9 and name CA and segid F) (resid 7 and name C8 and segid H)
or (resid 10 and name CA and segid F) (resid 7 and name C8 and segid H)
assign (resid 9 and name CA and segid F) (resid 6 and name C11 and segid H) 7.5 5.5 1.5
or  (resid 10 and name CA and segid F) (resid 6 and name C11 and segid H)

!PPI
assign (segid "F" and resid  8 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "F" and resid  8 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  9 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  9 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  10 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  10 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  11 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  11 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "F" and resid  8 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "F" and resid  8 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  9 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  9 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  10 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  10 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  11 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  11 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "F" and resid  8 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "F" and resid  8 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  9 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  9 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  10 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  10 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  11 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  11 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "F" and resid  8 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
!or (segid "F" and resid  8 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  9 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  9 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  10 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  10 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
assign (segid "F" and resid  11 and name HN) (segid "H" and resid 8 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  11 and name   HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "F" and resid  9 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  10 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "F" and resid  10 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "F" and resid  11 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "F" and resid  9 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  10 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "F" and resid  10 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "F" and resid  11 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "F" and resid  9 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  10 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "F" and resid  10 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "F" and resid  11 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))

assign (segid "F" and resid  9 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3)) 2.0 0.3 0.4
or (segid "F" and resid  10 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "F" and resid  10 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))
!or (segid "F" and resid  11 and name HN) (segid "H" and resid 9 and (name O1 or name O2 or name O3))








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