Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | position | program | type |
|
|
649424 | 6pk9 RC | 30622 | cing | 1-original | 2 | XPLOR/CNS | planarity |
!Planarity restraints
! G1-C20 WC
!--------------------------------------------------------------------
group
select= ((resid 1 and (name N1 or name C6 or name C2)) or
(resid 20 and (name N3)))
weight=80
end
group
select= ((resid 1 and (name N1)) or
(resid 20 and (name N3 or name C2 or name C4)))
weight=80
end
! G2-C19 WC
!--------------------------------------------------------------------
group
select= ((resid 2 and (name N1 or name C6 or name C2)) or
(resid 19 and (name N3)))
weight=80
end
group
select= ((resid 2 and (name N1)) or
(resid 19 and (name N3 or name C2 or name C4)))
weight=80
end
! A3-U18 WC
!--------------------------------------------------------------------
group
select= ((resid 3 and (name N1 or name C2 or name C6)) or
(resid 18 and (name N3)))
weight=80
end
group
select= ((resid 3 and (name N1)) or
(resid 18 and (name N3 or name C2 or name C4)))
weight=80
end
! G4-C17 WC
!--------------------------------------------------------------------
group
select= ((resid 4 and (name N1 or name C6 or name C2)) or
(resid 17 and (name N3)))
weight=80
end
group
select= ((resid 4 and (name N1)) or
(resid 17 and (name N3 or name C2 or name C4)))
weight=80
end
! G5-U16 Wobb
!--------------------------------------------------------------------
group
select= ((resid 5 and (name N1 or name C6 or name C2)) or
(resid 16 and (name N3)))
weight=80
end
group
select= ((resid 5 and (name N1)) or
(resid 16 and (name N3 or name C2 or name C4)))
weight=80
end
! G6-C15 WC
!--------------------------------------------------------------------
group
select= ((resid 6 and (name N1 or name C6 or name C2)) or
(resid 15 and (name N3)))
weight=80
end
group
select= ((resid 6 and (name N1)) or
(resid 15 and (name N3 or name C2 or name C4)))
weight=80
end
! U7-G14 Wobb
!--------------------------------------------------------------------
group
select= ((resid 14 and (name N1 or name C6 or name C2)) or
(resid 7 and (name N3)))
weight=80
end
group
select= ((resid 14 and (name N1)) or
(resid 7 and (name N3 or name C2 or name C4)))
weight=80
end
# Restraints file 3: D_1000241105_mr_P1.xplor-nih.V1
!
! Torsion angle restraints for sugar pucker in the
! - LINKA
!
!
! Pucker is defined with ribose torsion angles nu1 and nu2.
! nu1 = O4'-C1'-C2'-C3'
! nu2 = C1'-C2'-C3'-C4'
! "N" C3' endo:
! nu1 = -20 +/- 10
! nu2 = +35 +/- 5
! "S" C2' endo:
! nu1 = +35 +/- 10
! nu2 = -35 +/- 5
! See Saenger page 20.
!
! C2' endo nucleotides (Judging from TOCSY): only if both H1'-H2'' and
! H1'-H3' couplings both are strong (intensity of H1'-H3' even larger)
! Xhi is defined as follows...
! Purines = O4'-C1'-N9-C4
! pyrimidine = O4'-C1'-N1-C2
! Anti:
! Xhi = 180.0 +/- 90.0
! including high-anti and excluding high-syn :
! Xhi = =-150 +/- 90.0
! Syn: Xhi = 0.0 +/- 90.0
! See Saenger page 22.
!3' endo!