Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
647272 | 6szc RC | 34439 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_6szc
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 15
_NOE_completeness_stats.Residue_count 118
_NOE_completeness_stats.Total_atom_count 1171
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 397
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 50.4
_NOE_completeness_stats.Constraint_unexpanded_count 1585
_NOE_completeness_stats.Constraint_count 1853
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1056
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 40
_NOE_completeness_stats.Constraint_intraresidue_count 455
_NOE_completeness_stats.Constraint_surplus_count 197
_NOE_completeness_stats.Constraint_observed_count 1161
_NOE_completeness_stats.Constraint_expected_count 950
_NOE_completeness_stats.Constraint_matched_count 479
_NOE_completeness_stats.Constraint_unmatched_count 682
_NOE_completeness_stats.Constraint_exp_nonobs_count 471
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 405 304 174 57.2 1.0 .
medium-range 203 158 79 50.0 -0.2 .
long-range 553 488 226 46.3 -0.8 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 14 12 2 7 2 0 0 0 0 0 . 0 85.7 85.7
shell 2.00 2.50 131 89 1 25 22 16 11 4 7 0 . 3 67.9 69.7
shell 2.50 3.00 147 92 0 8 18 18 15 13 3 6 . 11 62.6 66.1
shell 3.00 3.50 249 121 0 1 6 16 32 21 16 7 . 22 48.6 58.0
shell 3.50 4.00 409 165 0 0 2 10 27 21 32 26 . 47 40.3 50.4
shell 4.00 4.50 654 177 0 0 0 2 8 10 32 34 . 91 27.1 40.9
shell 4.50 5.00 858 168 0 0 1 0 2 11 27 17 . 110 19.6 33.5
shell 5.00 5.50 1017 132 0 0 0 1 0 0 8 19 . 104 13.0 27.5
shell 5.50 6.00 1179 83 0 0 0 0 0 3 6 7 . 67 7.0 22.3
shell 6.00 6.50 1204 53 0 0 0 0 0 1 3 4 . 45 4.4 18.6
shell 6.50 7.00 1422 34 0 0 0 0 0 1 0 1 . 32 2.4 15.5
shell 7.00 7.50 1497 20 0 0 0 0 0 0 0 0 . 20 1.3 13.1
shell 7.50 8.00 1603 5 0 0 0 0 0 0 0 1 . 4 0.3 11.1
shell 8.00 8.50 1768 3 0 0 0 0 0 0 0 0 . 3 0.2 9.5
shell 8.50 9.00 1873 3 0 0 0 0 0 0 0 0 . 3 0.2 8.2
sums . . 14025 1157 3 41 51 63 95 85 134 122 . 562 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 41 GLN 7 0 5 0 0.0 -2.1 >sigma
1 42 GLY 3 0 9 0 0.0 -2.1 >sigma
1 43 GLY 3 18 16 7 43.8 -0.3 .
1 44 ASP 4 39 20 16 80.0 1.3 >sigma
1 45 PRO 5 29 12 9 75.0 1.1 >sigma
1 46 LEU 7 30 21 13 61.9 0.5 .
1 47 VAL 5 49 34 23 67.6 0.7 .
1 48 PRO 5 32 16 12 75.0 1.1 >sigma
1 49 ILE 6 85 50 27 54.0 0.2 .
1 50 ASP 4 56 30 27 90.0 1.7 >sigma
1 51 GLU 5 31 15 9 60.0 0.4 .
1 52 THR 4 21 11 10 90.9 1.7 >sigma
1 53 VAL 5 28 24 11 45.8 -0.2 .
1 54 GLU 5 17 16 7 43.8 -0.3 .
1 55 PRO 5 39 39 13 33.3 -0.7 .
1 56 THR 4 35 27 14 51.9 0.1 .
1 57 PHE 7 101 65 41 63.1 0.6 .
1 58 GLU 5 36 26 12 46.2 -0.2 .
1 59 ASP 4 17 11 9 81.8 1.3 >sigma
1 60 GLY 3 22 11 8 72.7 1.0 .
1 61 SER 4 24 18 11 61.1 0.5 .
1 62 LYS 7 35 31 16 51.6 0.1 .
1 63 GLU 5 43 25 18 72.0 0.9 .
1 64 LYS 7 51 46 24 52.2 0.1 .
1 65 THR 4 22 17 10 58.8 0.4 .
1 66 ILE 6 61 49 32 65.3 0.6 .
1 67 PRO 5 25 12 11 91.7 1.8 >sigma
1 68 GLY 3 14 8 5 62.5 0.5 .
1 69 GLN 7 39 53 23 43.4 -0.3 .
1 70 GLY 3 27 13 6 46.2 -0.2 .
1 71 THR 4 34 22 13 59.1 0.4 .
1 72 TYR 6 59 56 21 37.5 -0.5 .
1 73 THR 4 38 26 15 57.7 0.3 .
1 74 ILE 6 57 62 28 45.2 -0.2 .
1 75 VAL 5 22 24 5 20.8 -1.2 >sigma
1 76 PRO 5 31 12 9 75.0 1.1 >sigma
1 77 ASP 4 19 18 10 55.6 0.2 .
1 78 GLY 3 31 18 9 50.0 0.0 .
1 79 THR 4 30 20 10 50.0 0.0 .
1 80 VAL 5 33 50 15 30.0 -0.8 .
1 81 THR 4 20 16 7 43.8 -0.3 .
1 82 PHE 7 59 42 21 50.0 0.0 .
1 83 THR 4 17 14 4 28.6 -0.9 .
1 84 PRO 5 0 18 0 0.0 -2.1 >sigma
1 85 ASP 4 24 15 5 33.3 -0.7 .
1 86 LYS 7 14 10 7 70.0 0.8 .
1 87 GLN 7 15 13 9 69.2 0.8 .
1 88 PHE 7 27 29 10 34.5 -0.6 .
1 89 VAL 5 16 20 5 25.0 -1.0 >sigma
1 90 GLY 3 0 8 0 0.0 -2.1 >sigma
1 91 LYS 7 0 10 0 0.0 -2.1 >sigma
1 92 PRO 5 20 32 8 25.0 -1.0 >sigma
1 93 ASP 4 26 19 15 78.9 1.2 >sigma
1 94 PRO 5 25 19 9 47.4 -0.1 .
1 95 VAL 5 37 41 16 39.0 -0.5 .
1 96 THR 4 33 27 16 59.3 0.4 .
1 97 VAL 5 45 45 25 55.6 0.2 .
1 98 LYS 7 56 38 16 42.1 -0.3 .
1 99 ARG 7 44 68 21 30.9 -0.8 .
1 100 VAL 5 36 35 19 54.3 0.2 .
1 101 ASP 4 43 35 25 71.4 0.9 .
1 102 LYS 7 57 34 25 73.5 1.0 .
1 103 ASN 6 24 17 11 64.7 0.6 .
1 104 GLY 3 22 15 10 66.7 0.7 .
1 105 THR 4 35 12 8 66.7 0.7 .
1 106 PRO 5 40 24 20 83.3 1.4 >sigma
1 107 VAL 5 55 38 22 57.9 0.3 .
1 108 THR 4 30 28 19 67.9 0.8 .
1 109 ALA 3 26 20 13 65.0 0.6 .
1 110 THR 4 7 7 3 42.9 -0.3 .
1 111 TYR 6 27 33 9 27.3 -0.9 .
1 112 SER 4 15 13 6 46.2 -0.2 .
1 113 PRO 5 0 14 0 0.0 -2.1 >sigma
1 114 GLU 5 0 8 0 0.0 -2.1 >sigma
1 115 PHE 7 3 11 0 0.0 -2.1 >sigma
1 116 THR 4 5 8 2 25.0 -1.0 >sigma
1 117 LYS 7 24 21 9 42.9 -0.3 .
1 118 VAL 5 15 5 4 80.0 1.3 >sigma
stop_
save_