Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
614853 | 5jyu RC | 30092 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_5jyu
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 117
_NOE_completeness_stats.Total_atom_count 1831
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 635
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 45.9
_NOE_completeness_stats.Constraint_unexpanded_count 2049
_NOE_completeness_stats.Constraint_count 2049
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1531
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 547
_NOE_completeness_stats.Constraint_surplus_count 0
_NOE_completeness_stats.Constraint_observed_count 1502
_NOE_completeness_stats.Constraint_expected_count 1531
_NOE_completeness_stats.Constraint_matched_count 703
_NOE_completeness_stats.Constraint_unmatched_count 799
_NOE_completeness_stats.Constraint_exp_nonobs_count 828
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 554 501 309 61.7 0.9 .
medium-range 418 337 153 45.4 -0.1 .
long-range 530 693 241 34.8 -0.8 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 8 8 0 0 0 2 2 2 1 1 . 0 100.0 100.0
shell 2.00 2.50 117 89 0 0 1 46 14 18 7 3 . 0 76.1 77.6
shell 2.50 3.00 294 185 0 0 0 40 45 58 26 8 . 8 62.9 67.3
shell 3.00 3.50 394 157 0 0 0 6 30 53 28 20 . 20 39.8 54.0
shell 3.50 4.00 718 264 0 0 0 4 23 85 75 40 . 37 36.8 45.9
shell 4.00 4.50 1115 302 0 0 0 2 14 64 60 61 . 101 27.1 38.0
shell 4.50 5.00 1512 238 0 0 0 1 1 24 40 67 . 105 15.7 29.9
shell 5.00 5.50 1970 154 0 0 0 0 0 4 31 43 . 76 7.8 22.8
shell 5.50 6.00 2228 73 0 0 0 0 0 0 7 27 . 39 3.3 17.6
shell 6.00 6.50 2422 26 0 0 0 0 0 0 0 6 . 20 1.1 13.9
shell 6.50 7.00 2670 6 0 0 0 0 0 0 0 1 . 5 0.2 11.2
shell 7.00 7.50 2858 0 0 0 0 0 0 0 0 0 . 0 0.0 9.2
shell 7.50 8.00 3160 0 0 0 0 0 0 0 0 0 . 0 0.0 7.7
shell 8.00 8.50 3437 0 0 0 0 0 0 0 0 0 . 0 0.0 6.6
shell 8.50 9.00 3614 0 0 0 0 0 0 0 0 0 . 0 0.0 5.7
sums . . 26517 1502 0 0 1 101 129 308 275 277 . 411 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLU 5 0 4 0 0.0 -2.9 >sigma
1 2 GLY 3 8 14 3 21.4 -1.6 >sigma
1 3 ARG 7 30 19 12 63.2 0.8 .
1 4 ILE 6 43 54 22 40.7 -0.5 .
1 5 VAL 5 37 51 21 41.2 -0.5 .
1 6 LEU 7 41 62 23 37.1 -0.7 .
1 7 VAL 5 36 53 21 39.6 -0.6 .
1 8 SER 4 23 25 13 52.0 0.2 .
1 9 GLU 5 22 18 8 44.4 -0.3 .
1 10 ASP 4 17 16 9 56.3 0.4 .
1 11 GLU 5 14 11 7 63.6 0.8 .
1 12 ALA 3 22 12 10 83.3 2.0 >sigma
1 13 THR 4 30 22 16 72.7 1.4 >sigma
1 14 SER 4 24 22 15 68.2 1.1 >sigma
1 15 THR 4 19 13 9 69.2 1.2 >sigma
1 16 LEU 7 25 22 11 50.0 0.0 .
1 17 ILE 6 54 59 28 47.5 -0.1 .
1 18 CYS 4 31 27 20 74.1 1.4 >sigma
1 19 SER 4 25 14 8 57.1 0.5 .
1 20 ILE 6 58 47 29 61.7 0.7 .
1 21 LEU 7 42 60 21 35.0 -0.8 .
1 22 THR 4 40 18 15 83.3 2.0 >sigma
1 23 THR 4 25 14 11 78.6 1.7 >sigma
1 24 ALA 3 29 19 13 68.4 1.1 >sigma
1 25 GLY 3 19 8 7 87.5 2.2 >sigma
1 26 TYR 6 28 34 11 32.4 -1.0 .
1 27 GLN 7 25 16 10 62.5 0.8 .
1 28 VAL 5 42 45 22 48.9 -0.0 .
1 29 ILE 6 28 28 11 39.3 -0.6 .
1 30 TRP 10 31 30 11 36.7 -0.7 .
1 31 LEU 7 30 46 20 43.5 -0.3 .
1 32 VAL 5 31 17 13 76.5 1.6 >sigma
1 33 ASP 4 29 16 10 62.5 0.8 .
1 34 GLY 3 19 29 8 27.6 -1.3 >sigma
1 35 GLU 5 25 23 10 43.5 -0.3 .
1 36 VAL 5 42 40 21 52.5 0.2 .
1 37 GLU 5 13 19 8 42.1 -0.4 .
1 38 ARG 7 20 25 6 24.0 -1.5 >sigma
1 39 LEU 7 34 57 15 26.3 -1.3 >sigma
1 40 LEU 7 29 32 12 37.5 -0.7 .
1 41 ALA 3 19 17 9 52.9 0.2 .
1 42 LEU 7 24 22 8 36.4 -0.8 .
1 43 THR 4 19 15 8 53.3 0.2 .
1 44 PRO 5 38 43 19 44.2 -0.3 .
1 45 ILE 6 33 31 16 51.6 0.1 .
1 46 ALA 3 45 33 17 51.5 0.1 .
1 47 VAL 5 51 55 24 43.6 -0.3 .
1 48 LEU 7 40 60 19 31.7 -1.0 >sigma
1 49 LEU 7 41 54 22 40.7 -0.5 .
1 50 ALA 3 29 27 17 63.0 0.8 .
1 51 GLU 5 29 25 13 52.0 0.2 .
1 52 PRO 5 14 14 7 50.0 0.0 .
1 53 PHE 7 11 30 8 26.7 -1.3 >sigma
1 54 SER 4 8 16 7 43.8 -0.3 .
1 55 TYR 6 15 32 6 18.8 -1.8 >sigma
1 56 GLY 3 10 11 6 54.5 0.3 .
1 57 ASP 4 14 8 5 62.5 0.8 .
1 58 VAL 5 22 30 12 40.0 -0.5 .
1 59 GLN 7 20 17 10 58.8 0.6 .
1 60 GLU 5 27 18 9 50.0 0.0 .
1 61 LEU 7 33 57 15 26.3 -1.3 >sigma
1 62 VAL 5 36 40 21 52.5 0.2 .
1 63 ASP 4 28 20 12 60.0 0.6 .
1 64 GLN 7 27 26 10 38.5 -0.6 .
1 65 LEU 7 31 50 15 30.0 -1.1 >sigma
1 66 ARG 7 31 23 14 60.9 0.7 .
1 67 GLN 7 23 20 12 60.0 0.6 .
1 68 ARG 7 35 28 17 60.7 0.7 .
1 69 CYS 4 32 20 13 65.0 0.9 .
1 70 THR 4 29 14 12 85.7 2.1 >sigma
1 71 PRO 5 17 11 7 63.6 0.8 .
1 72 GLU 5 14 13 7 53.8 0.3 .
1 73 GLN 7 22 18 11 61.1 0.7 .
1 74 LEU 7 39 46 20 43.5 -0.3 .
1 75 LYS 7 28 38 11 28.9 -1.2 >sigma
1 76 ILE 6 50 51 25 49.0 -0.0 .
1 77 PHE 7 41 54 15 27.8 -1.3 >sigma
1 78 ILE 6 50 47 18 38.3 -0.6 .
1 79 LEU 7 52 55 23 41.8 -0.4 .
1 80 GLY 3 23 20 10 50.0 0.0 .
1 81 SER 4 13 10 5 50.0 0.0 .
1 82 LYS 7 12 9 7 77.8 1.7 >sigma
1 83 GLY 3 12 18 6 33.3 -0.9 .
1 84 ASN 6 8 5 3 60.0 0.6 .
1 85 TYR 6 17 13 7 53.8 0.3 .
1 86 GLN 7 11 8 5 62.5 0.8 .
1 87 GLY 3 9 11 5 45.5 -0.2 .
1 88 VAL 5 36 45 23 51.1 0.1 .
1 89 ASP 4 18 19 12 63.2 0.8 .
1 90 ARG 7 25 24 9 37.5 -0.7 .
1 91 TYR 6 23 31 8 25.8 -1.4 >sigma
1 92 ILE 6 57 52 25 48.1 -0.1 .
1 93 PRO 5 19 16 9 56.3 0.4 .
1 94 LEU 7 29 31 13 41.9 -0.4 .
1 95 PRO 5 11 10 5 50.0 0.0 .
1 96 ILE 6 43 41 22 53.7 0.3 .
1 97 HIS 6 15 15 9 60.0 0.6 .
1 98 PRO 5 21 21 12 57.1 0.5 .
1 99 GLU 5 18 13 7 53.8 0.3 .
1 100 SER 4 26 17 13 76.5 1.6 >sigma
1 101 PHE 7 36 67 17 25.4 -1.4 >sigma
1 102 LEU 7 41 24 11 45.8 -0.2 .
1 103 GLN 7 21 15 11 73.3 1.4 >sigma
1 104 GLN 7 28 22 14 63.6 0.8 .
1 105 VAL 5 34 35 17 48.6 -0.0 .
1 106 THR 4 26 19 13 68.4 1.1 >sigma
1 107 MET 6 24 15 11 73.3 1.4 >sigma
1 108 GLY 3 18 13 7 53.8 0.3 .
1 109 LEU 7 32 22 11 50.0 0.0 .
1 110 THR 4 17 13 7 53.8 0.3 .
1 111 SER 4 4 7 4 57.1 0.5 .
1 112 LEU 7 5 20 3 15.0 -2.0 >sigma
1 113 ALA 3 1 10 1 10.0 -2.3 >sigma
1 114 THR 4 1 6 1 16.7 -1.9 >sigma
1 115 SER 4 1 7 1 14.3 -2.0 >sigma
1 116 ALA 3 1 6 1 16.7 -1.9 >sigma
1 117 GLN 7 1 2 1 50.0 0.0 .
stop_
save_