Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | position | program | type |
|
|
561942 | 2m54 RC | 16138 | cing | 1-original | 4 | XPLOR/CNS | dihedral angle |
{angles}
restraints dihedral
nassign=1000
for $1 in (
{====>} {* Select nucleotides to be restrained. *}
1 2 3 4 5 6 7 11 12 13 14 15 16 17 18 19 20 21 22 23 24 28 29 30 31 32 33 34
) loop dihe
evaluate($a=$1+1)
evaluate($b=$1-1)
assign ( resid $b and name O3' )
( resid $1 and name P )
( resid $1 and name O5' )
( resid $1 and name C5' ) 20.0 -70.0 20.0 2 {* alpha *}
assign ( resid $1 and name P )
( resid $1 and name O5' )
( resid $1 and name C5' )
( resid $1 and name C4' ) 20.0 180.0 20.0 2 {* beta *}
assign ( resid $1 and name O5' )
( resid $1 and name C5' )
( resid $1 and name C4' )
( resid $1 and name C3' ) 20.0 60.0 20.0 2 {* gamma *}
assign ( resid $1 and name c5' )
( resid $1 and name c4' )
( resid $1 and name c3' )
( resid $1 and name o3' ) 30.0 140.0 30.0 2 {* delta *}
assign ( resid $1 and name c4' )
( resid $1 and name c3' )
( resid $1 and name o3' )
( resid $a and name P ) 20.0 -170.0 20.0 2 {* epsilon *}
assign ( resid $1 and name C3' )
( resid $1 and name O3' )
( resid $a and name P )
( resid $a and name O5' ) 20.0 -85.0 20.0 2 {* zeta *}
end loop dihe
for $1 in (
{====>} {* Select nucleotides to be restrained. *}
8 9 10 25 26 27
) loop dihe
evaluate($a=$1+1)
evaluate($b=$1-1)
assign ( resid $b and name O3' )
( resid $1 and name P )
( resid $1 and name O5' )
( resid $1 and name C5' ) 20.0 -70.0 20.0 2 {* alpha *}
assign ( resid $1 and name P )
( resid $1 and name O5' )
( resid $1 and name C5' )
( resid $1 and name C4' ) 20.0 180.0 20.0 2 {* beta *}
assign ( resid $1 and name O5' )
( resid $1 and name C5' )
( resid $1 and name C4' )
( resid $1 and name C3' ) 20.0 60.0 20.0 2 {* gamma *}
assign ( resid $1 and name c4' )
( resid $1 and name c3' )
( resid $1 and name o3' )
( resid $a and name P ) 20.0 -170.0 20.0 2 {* epsilon *}
assign ( resid $1 and name C3' )
( resid $1 and name O3' )
( resid $a and name P )
( resid $a and name O5' ) 20.0 -85.0 20.0 2 {* zeta *}
end loop dihe
for $1 in (
{====>} {* Select purines to be restrained. *}
3 4 11 12 13 16 17 20 21 28 29 30 33 34
) loop dihe
assign ( resid $1 and name O4' )
( resid $1 and name C1' )
( resid $1 and name N9 )
( resid $1 and name C4 ) 20.0 -120.0 20.0 2 {* chi *}
end loop dihe
for $1 in (
{====>} {* Select pyrimidines to be restrained. *}
1 2 5 6 7 14 15 18 19 22 23 24 31 32
) loop dihe
assign ( resid $1 and name O4' )
( resid $1 and name C1' )
( resid $1 and name N1 )
( resid $1 and name C2 ) 20.0 -120.00 20.0 2 {* chi *}
end loop dihe
scale=20.0
end