Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
550460 | 2lyd RC | 18720 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2lyd
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 21
_NOE_completeness_stats.Residue_count 172
_NOE_completeness_stats.Total_atom_count 2754
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 979
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 21.2
_NOE_completeness_stats.Constraint_unexpanded_count 640
_NOE_completeness_stats.Constraint_count 640
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1979
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 82
_NOE_completeness_stats.Constraint_surplus_count 15
_NOE_completeness_stats.Constraint_observed_count 543
_NOE_completeness_stats.Constraint_expected_count 1972
_NOE_completeness_stats.Constraint_matched_count 418
_NOE_completeness_stats.Constraint_unmatched_count 125
_NOE_completeness_stats.Constraint_exp_nonobs_count 1554
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 255 665 185 27.8 1.2 >sigma
medium-range 51 368 47 12.8 -1.0 .
long-range 210 804 163 20.3 0.1 .
intermolecular 27 135 23 17.0 -0.4 .
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 21 6 0 0 0 1 3 2 0 0 . 0 28.6 28.6
shell 2.00 2.50 221 99 0 78 1 6 11 2 1 0 . 0 44.8 43.4
shell 2.50 3.00 333 102 0 50 9 11 18 9 0 2 . 3 30.6 36.0
shell 3.00 3.50 515 90 0 0 3 27 24 19 6 3 . 8 17.5 27.2
shell 3.50 4.00 882 121 0 0 0 31 19 24 3 2 . 42 13.7 21.2
shell 4.00 4.50 1426 98 0 0 0 0 10 17 12 3 . 56 6.9 15.2
shell 4.50 5.00 1874 24 0 0 0 0 0 4 2 3 . 15 1.3 10.2
shell 5.00 5.50 2365 3 0 0 0 0 0 0 2 0 . 1 0.1 7.1
shell 5.50 6.00 2826 0 0 0 0 0 0 0 0 0 . 0 0.0 5.2
shell 6.00 6.50 3029 0 0 0 0 0 0 0 0 0 . 0 0.0 4.0
shell 6.50 7.00 3369 0 0 0 0 0 0 0 0 0 . 0 0.0 3.2
shell 7.00 7.50 3565 0 0 0 0 0 0 0 0 0 . 0 0.0 2.7
shell 7.50 8.00 4043 0 0 0 0 0 0 0 0 0 . 0 0.0 2.2
shell 8.00 8.50 4263 0 0 0 0 0 0 0 0 0 . 0 0.0 1.9
shell 8.50 9.00 4574 0 0 0 0 0 0 0 0 0 . 0 0.0 1.6
sums . . 33306 543 0 128 13 76 85 77 26 13 . 125 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 0 2 0 0.0 -1.6 >sigma
1 2 PRO 5 0 5 0 0.0 -1.6 >sigma
1 3 HIS 6 0 8 0 0.0 -1.6 >sigma
1 4 MET 6 0 9 0 0.0 -1.6 >sigma
1 5 ALA 3 0 6 0 0.0 -1.6 >sigma
1 6 ASP 4 0 6 0 0.0 -1.6 >sigma
1 7 LEU 7 0 9 0 0.0 -1.6 >sigma
1 8 MET 6 1 11 1 9.1 -0.9 .
1 9 ALA 3 3 6 2 33.3 1.0 .
1 10 ASP 4 4 11 2 18.2 -0.2 .
1 11 GLU 5 5 9 4 44.4 1.8 >sigma
1 12 SER 4 5 15 5 33.3 1.0 .
1 13 ILE 6 6 23 6 26.1 0.4 .
1 14 THR 4 9 21 9 42.9 1.7 >sigma
1 15 ARG 7 6 18 6 33.3 1.0 .
1 16 MET 6 7 16 7 43.8 1.8 >sigma
1 17 ASN 6 11 27 11 40.7 1.5 >sigma
1 18 LEU 7 19 49 16 32.7 0.9 .
1 19 ALA 3 6 16 6 37.5 1.3 >sigma
1 20 ALA 3 8 18 8 44.4 1.8 >sigma
1 21 ILE 6 21 54 19 35.2 1.1 >sigma
1 22 LYS 7 7 32 7 21.9 0.1 .
1 23 LYS 7 5 19 5 26.3 0.4 .
1 24 ILE 6 11 36 9 25.0 0.3 .
1 25 ASP 4 7 23 7 30.4 0.7 .
1 26 PRO 5 4 13 4 30.8 0.8 .
1 27 TYR 6 6 28 6 21.4 0.1 .
1 28 ALA 3 13 27 12 44.4 1.8 >sigma
1 29 LYS 7 5 15 4 26.7 0.5 .
1 30 GLU 5 12 23 7 30.4 0.7 .
1 31 ILE 6 23 54 18 33.3 1.0 .
1 32 VAL 5 9 34 7 20.6 -0.0 .
1 33 ASP 4 12 28 9 32.1 0.9 .
1 34 SER 4 10 19 7 36.8 1.2 >sigma
1 35 SER 4 14 26 10 38.5 1.4 >sigma
1 36 SER 4 3 6 2 33.3 1.0 .
1 37 HIS 6 3 21 2 9.5 -0.9 .
1 38 VAL 5 12 52 10 19.2 -0.1 .
1 39 ALA 3 13 23 9 39.1 1.4 >sigma
1 40 PHE 7 7 41 5 12.2 -0.7 .
1 41 TYR 6 19 53 13 24.5 0.3 .
1 42 THR 4 10 23 5 21.7 0.1 .
1 43 PHE 7 11 58 5 8.6 -0.9 .
1 44 ASN 6 9 13 6 46.2 1.9 >sigma
1 45 SER 4 5 15 4 26.7 0.5 .
1 46 SER 4 4 12 4 33.3 1.0 .
1 47 GLN 7 6 16 5 31.3 0.8 .
1 48 ASN 6 6 13 5 38.5 1.4 >sigma
1 49 GLU 5 7 19 5 26.3 0.4 .
1 50 TRP 10 25 68 15 22.1 0.1 .
1 51 GLU 5 11 9 4 44.4 1.8 >sigma
1 52 LYS 7 7 30 5 16.7 -0.3 .
1 53 THR 4 8 19 4 21.1 0.0 .
1 54 ASP 4 4 11 3 27.3 0.5 .
1 55 VAL 5 14 37 12 32.4 0.9 .
1 56 GLU 5 8 24 4 16.7 -0.3 .
1 57 GLY 3 11 17 7 41.2 1.6 >sigma
1 58 ALA 3 15 19 11 57.9 2.8 >sigma
1 59 PHE 7 25 68 20 29.4 0.7 .
1 60 PHE 7 20 51 16 31.4 0.8 .
1 61 ILE 6 20 63 13 20.6 -0.0 .
1 62 TYR 6 16 43 11 25.6 0.4 .
1 63 HIS 6 8 22 5 22.7 0.2 .
1 64 ARG 7 7 40 4 10.0 -0.8 .
1 65 ASN 6 4 8 3 37.5 1.3 >sigma
1 66 ALA 3 4 14 4 28.6 0.6 .
1 67 GLU 5 4 9 3 33.3 1.0 .
1 68 PRO 5 3 16 2 12.5 -0.6 .
1 69 PHE 7 5 18 5 27.8 0.5 .
1 70 HIS 6 8 30 8 26.7 0.5 .
1 71 SER 4 9 23 7 30.4 0.7 .
1 72 ILE 6 13 48 9 18.8 -0.2 .
1 73 PHE 7 9 53 6 11.3 -0.7 .
1 74 ILE 6 19 52 16 30.8 0.8 .
1 75 ASN 6 11 23 8 34.8 1.1 >sigma
1 76 ASN 6 6 40 4 10.0 -0.8 .
1 77 ARG 7 6 14 4 28.6 0.6 .
1 78 LEU 7 6 20 4 20.0 -0.1 .
1 79 ASN 6 2 26 2 7.7 -1.0 .
1 80 THR 4 1 9 1 11.1 -0.7 .
1 81 THR 4 3 16 2 12.5 -0.6 .
1 82 SER 4 10 21 7 33.3 1.0 .
1 83 PHE 7 12 26 8 30.8 0.8 .
1 84 VAL 5 6 18 4 22.2 0.1 .
1 85 GLU 5 6 15 4 26.7 0.5 .
1 86 PRO 5 4 16 3 18.8 -0.2 .
1 87 ILE 6 12 44 9 20.5 -0.0 .
1 88 THR 4 3 13 2 15.4 -0.4 .
1 89 GLY 3 2 11 2 18.2 -0.2 .
1 90 SER 4 3 9 3 33.3 1.0 .
1 91 LEU 7 4 25 3 12.0 -0.7 .
1 92 GLU 5 3 17 1 5.9 -1.1 >sigma
1 93 LEU 7 9 37 6 16.2 -0.3 .
1 94 GLN 7 10 31 7 22.6 0.1 .
1 95 SER 4 5 8 3 37.5 1.3 >sigma
1 96 GLN 7 7 29 5 17.2 -0.3 .
1 97 PRO 5 2 7 1 14.3 -0.5 .
1 98 PRO 5 2 14 2 14.3 -0.5 .
1 99 PHE 7 6 46 6 13.0 -0.6 .
1 100 LEU 7 7 37 6 16.2 -0.3 .
1 101 LEU 7 11 57 9 15.8 -0.4 .
1 102 TYR 6 11 42 9 21.4 0.1 .
1 103 ARG 7 7 46 5 10.9 -0.8 .
1 104 ASN 6 1 22 0 0.0 -1.6 >sigma
1 105 GLU 5 0 12 0 0.0 -1.6 >sigma
1 106 ARG 7 0 10 0 0.0 -1.6 >sigma
1 107 SER 4 4 19 4 21.1 0.0 .
1 108 ARG 7 4 22 3 13.6 -0.5 .
1 109 ILE 6 14 48 10 20.8 0.0 .
1 110 ARG 7 9 45 4 8.9 -0.9 .
1 111 GLY 3 9 28 7 25.0 0.3 .
1 112 PHE 7 6 50 4 8.0 -1.0 .
1 113 TRP 10 10 40 6 15.0 -0.4 .
1 114 PHE 7 2 56 1 1.8 -1.4 >sigma
1 115 TYR 6 0 28 0 0.0 -1.6 >sigma
1 116 ASN 6 3 25 2 8.0 -1.0 .
1 117 SER 4 2 14 2 14.3 -0.5 .
1 118 GLU 5 7 16 6 37.5 1.3 >sigma
1 119 GLU 5 4 27 4 14.8 -0.5 .
1 120 CYS 4 4 24 4 16.7 -0.3 .
1 121 ASP 4 4 13 4 30.8 0.8 .
1 122 ARG 7 5 17 5 29.4 0.7 .
1 123 ILE 6 17 57 14 24.6 0.3 .
1 124 SER 4 9 22 8 36.4 1.2 >sigma
1 125 GLY 3 4 11 4 36.4 1.2 >sigma
1 126 LEU 7 6 32 6 18.8 -0.2 .
1 127 VAL 5 9 42 8 19.0 -0.1 .
1 128 ASN 6 5 22 5 22.7 0.2 .
1 129 GLY 3 4 15 4 26.7 0.5 .
1 130 LEU 7 9 31 9 29.0 0.6 .
1 131 LEU 7 6 33 6 18.2 -0.2 .
1 132 LYS 7 4 18 4 22.2 0.1 .
1 133 SER 4 4 11 3 27.3 0.5 .
1 134 LYS 7 2 3 1 33.3 1.0 .
2 1 GLY 3 0 2 0 0.0 -1.6 >sigma
2 2 PRO 5 0 5 0 0.0 -1.6 >sigma
2 3 GLN 7 2 6 1 16.7 -0.3 .
2 4 ASP 4 3 6 1 16.7 -0.3 .
2 5 PRO 5 1 7 0 0.0 -1.6 >sigma
2 6 LEU 7 0 8 0 0.0 -1.6 >sigma
2 7 LEU 7 0 9 0 0.0 -1.6 >sigma
2 8 GLN 7 0 10 0 0.0 -1.6 >sigma
2 9 GLN 7 0 11 0 0.0 -1.6 >sigma
2 10 GLN 7 1 12 1 8.3 -0.9 .
2 11 ARG 7 3 8 2 25.0 0.3 .
2 12 ALA 3 3 7 1 14.3 -0.5 .
2 13 PRO 5 1 6 0 0.0 -1.6 >sigma
2 14 PHE 7 0 8 0 0.0 -1.6 >sigma
2 15 PRO 5 0 8 0 0.0 -1.6 >sigma
2 16 GLY 3 0 6 0 0.0 -1.6 >sigma
2 17 GLN 7 2 8 1 12.5 -0.6 .
2 18 MET 6 10 29 8 27.6 0.5 .
2 19 PRO 5 3 11 1 9.1 -0.9 .
2 20 ASN 6 4 6 3 50.0 2.2 >sigma
2 21 LEU 7 12 32 9 28.1 0.6 .
2 22 PRO 5 2 11 1 9.1 -0.9 .
2 23 LYS 7 6 26 4 15.4 -0.4 .
2 24 PRO 5 2 25 1 4.0 -1.3 >sigma
2 25 PRO 5 0 13 0 0.0 -1.6 >sigma
2 26 LEU 7 1 10 1 10.0 -0.8 .
2 27 PHE 7 3 17 3 17.6 -0.2 .
2 28 TRP 10 9 61 8 13.1 -0.6 .
2 29 GLN 7 5 28 5 17.9 -0.2 .
2 30 GLN 7 4 16 4 25.0 0.3 .
2 31 GLU 5 4 19 4 21.1 0.0 .
2 32 ALA 3 6 23 6 26.1 0.4 .
2 33 GLN 7 4 18 4 22.2 0.1 .
2 34 LYS 7 3 15 3 20.0 -0.1 .
2 35 GLN 7 1 17 1 5.9 -1.1 >sigma
2 36 GLU 5 2 26 2 7.7 -1.0 .
2 37 ALA 3 2 9 1 11.1 -0.7 .
2 38 LEU 7 2 2 1 50.0 2.2 >sigma
stop_
save_