Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | position | program | type |
|
|
519510 | 2ldt RC | 17682 | cing | 1-original | 2 | XPLOR/CNS | planarity |
restraints plane
!G1-C31
group
select= ((resid 1 and (name n1 or name c6 or name c2)) or
(resid 31 and (name n3)))
weight=80.0
end
group
select= ((resid 1 and (name n1)) or
(resid 31 and (name n3 or name c2 or name c4)))
weight=80.0
end
!G2-C30
group
select= ((resid 2 and (name n1 or name c6 or name c2)) or
(resid 30 and (name n3)))
weight=40.0
end
group
select= ((resid 2 and (name n1)) or
(resid 30 and (name n3 or name c2 or name c4)))
weight=40.0
end
!G3-C29
group
select= ((resid 3 and (name n1 or name c6 or name c2)) or
(resid 29 and (name n3)))
weight=40.0
end
group
select= ((resid 3 and (name n1)) or
(resid 29 and (name n3 or name c2 or name c4)))
weight=40.0
end
!G4-C28
group
select= ((resid 4 and (name n1 or name c6 or name c2)) or
(resid 28 and (name n3)))
weight=20.0
end
group
select= ((resid 4 and (name n1)) or
(resid 28 and (name n3 or name c2 or name c4)))
weight=20.0
end
!A5-G27
group
select= ((resid 27 and (name n1 or name c6 or name c2)) or
(resid 5 and (name n1)))
weight=20.0
end
group
select= ((resid 27 and (name n1)) or
(resid 5 and (name n1 or name c6 or name c2)))
weight=20.0
end
!G6-C26
group
select= ((resid 6 and (name n1 or name c6 or name c2)) or
(resid 26 and (name n3)))
weight=10.0
end
group
select= ((resid 6 and (name n1)) or
(resid 26 and (name n3 or name c2 or name c4)))
weight=10.0
end
!C13-G18
group
select= ((resid 18 and (name n1 or name c6 or name c2)) or
(resid 13 and (name n3)))
weight=80.0
end
group
select= ((resid 18 and (name n1)) or
(resid 13 and (name n3 or name c2 or name c4)))
weight=80.0
end
!C12-G19
group
select= ((resid 19 and (name n1 or name c6 or name c2)) or
(resid 12 and (name n3)))
weight=40.0
end
group
select= ((resid 19 and (name n1)) or
(resid 12 and (name n3 or name c2 or name c4)))
weight=40.0
end
!G11-U20
group
select= ((resid 11 and (name n1 or name c6 or name c2)) or
(resid 20 and (name n3)))
weight=20.0
end
group
select= ((resid 11 and (name n1)) or
(resid 20 and (name n3 or name c2 or name c4)))
weight=20.0
end
!G10-U21
group
select= ((resid 10 and (name n1 or name c6 or name c2)) or
(resid 21 and (name n3)))
weight=10.0
end
group
select= ((resid 10 and (name n1)) or
(resid 21 and (name n3 or name c2 or name c4)))
weight=10.0
end
!G14-A17
group
select= ((resid 14 and (name n3 or name c4 or name c2)) or
(resid 17 and (name n6)))
weight=10.0
end
group
select= ((resid 14 and (name n3)) or
(resid 17 and (name n3 or name n1 or name c6)))
weight=10.0
end
end
remarks refinement of RNA using torsion angle and base-base positional database potentials of mean force
remarks In this example, there is also dipolar coupling cross-validation.
remarks Clore, G.M. & Kuszewski, J. (2003) Inproving the accuracy
remarks of NMR structures of RNA by means of conformational database
remarks potentials of mean force as assessed by complete dipolar
remarks coupling cross-validation. J. Am. Chem. Soc. 125, 1518-1525