Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
486888 | 2agm RC | 6390 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2agm
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 167
_NOE_completeness_stats.Total_atom_count 2296
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 799
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 44.4
_NOE_completeness_stats.Constraint_unexpanded_count 1437
_NOE_completeness_stats.Constraint_count 1437
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1383
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 473
_NOE_completeness_stats.Constraint_surplus_count 10
_NOE_completeness_stats.Constraint_observed_count 954
_NOE_completeness_stats.Constraint_expected_count 1374
_NOE_completeness_stats.Constraint_matched_count 610
_NOE_completeness_stats.Constraint_unmatched_count 344
_NOE_completeness_stats.Constraint_exp_nonobs_count 764
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 426 547 314 57.4 1.0 >sigma
medium-range 103 151 54 35.8 -0.5 .
long-range 425 676 242 35.8 -0.5 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 1 1 0 0 0 1 0 0 0 0 . 0 100.0 100.0
shell 2.00 2.50 139 116 31 57 13 6 3 1 0 2 . 3 83.5 83.6
shell 2.50 3.00 240 156 0 37 50 26 19 12 1 2 . 9 65.0 71.8
shell 3.00 3.50 382 154 0 3 41 43 25 22 6 4 . 10 40.3 56.0
shell 3.50 4.00 612 183 0 1 5 43 42 31 20 16 . 25 29.9 44.4
shell 4.00 4.50 1099 177 0 0 0 8 65 45 17 13 . 29 16.1 31.8
shell 4.50 5.00 1549 92 0 0 0 1 4 29 14 10 . 34 5.9 21.9
shell 5.00 5.50 1832 49 0 0 0 0 0 4 7 17 . 21 2.7 15.9
shell 5.50 6.00 2269 19 0 0 0 0 0 0 3 5 . 11 0.8 11.7
shell 6.00 6.50 2567 6 0 0 0 0 0 0 2 1 . 3 0.2 8.9
shell 6.50 7.00 2780 0 0 0 0 0 0 0 0 0 . 0 0.0 7.1
shell 7.00 7.50 3058 1 0 0 0 0 0 0 0 0 . 1 0.0 5.8
shell 7.50 8.00 3287 0 0 0 0 0 0 0 0 0 . 0 0.0 4.8
shell 8.00 8.50 3535 0 0 0 0 0 0 0 0 0 . 0 0.0 4.1
shell 8.50 9.00 3812 0 0 0 0 0 0 0 0 0 . 0 0.0 3.5
sums . . 27162 954 31 98 109 128 158 144 70 70 . 146 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 0 2 0 0.0 -2.6 >sigma
1 2 SER 4 0 6 0 0.0 -2.6 >sigma
1 3 ASP 4 3 8 3 37.5 -0.5 .
1 4 GLY 3 7 9 5 55.6 0.6 .
1 5 GLU 5 8 8 7 87.5 2.3 >sigma
1 6 PRO 5 9 15 7 46.7 0.1 .
1 7 LEU 7 11 21 5 23.8 -1.2 >sigma
1 8 VAL 5 18 16 9 56.3 0.6 .
1 9 GLY 3 9 13 6 46.2 0.0 .
1 10 GLY 3 0 6 0 0.0 -2.6 >sigma
1 11 ASP 4 8 10 4 40.0 -0.3 .
1 12 THR 4 7 7 4 57.1 0.6 .
1 13 ASP 4 8 9 5 55.6 0.6 .
1 14 ASP 4 14 10 9 90.0 2.5 >sigma
1 15 GLN 7 17 17 12 70.6 1.4 >sigma
1 16 LEU 7 31 49 19 38.8 -0.4 .
1 17 GLN 7 10 10 6 60.0 0.8 .
1 18 GLY 3 8 11 5 45.5 -0.0 .
1 19 GLY 3 2 9 2 22.2 -1.3 >sigma
1 20 SER 4 6 11 6 54.5 0.5 .
1 21 GLY 3 4 6 3 50.0 0.2 .
1 22 ALA 3 8 8 5 62.5 0.9 .
1 23 ASP 4 10 12 6 50.0 0.2 .
1 24 ARG 7 5 20 5 25.0 -1.2 >sigma
1 25 LEU 7 25 44 12 27.3 -1.0 >sigma
1 26 ASP 4 20 19 13 68.4 1.3 >sigma
1 27 GLY 3 11 17 8 47.1 0.1 .
1 28 GLY 3 8 10 6 60.0 0.8 .
1 29 ALA 3 10 13 8 61.5 0.9 .
1 30 GLY 3 7 8 6 75.0 1.6 >sigma
1 31 ASP 4 6 9 3 33.3 -0.7 .
1 32 ASP 4 13 17 7 41.2 -0.3 .
1 33 ILE 6 26 33 16 48.5 0.2 .
1 34 LEU 7 26 57 17 29.8 -0.9 .
1 35 ASP 4 19 18 11 61.1 0.9 .
1 36 GLY 3 7 12 5 41.7 -0.2 .
1 37 GLY 3 7 9 6 66.7 1.2 >sigma
1 38 ALA 3 12 19 9 47.4 0.1 .
1 39 GLY 3 7 14 5 35.7 -0.6 .
1 40 ARG 7 10 17 6 35.3 -0.6 .
1 41 ASP 4 14 12 8 66.7 1.2 >sigma
1 42 ARG 7 12 27 9 33.3 -0.7 .
1 43 LEU 7 24 40 12 30.0 -0.9 .
1 44 SER 4 21 17 10 58.8 0.7 .
1 45 GLY 3 14 20 8 40.0 -0.3 .
1 46 GLY 3 7 7 4 57.1 0.6 .
1 47 ALA 3 5 5 4 80.0 1.9 >sigma
1 48 GLY 3 6 8 5 62.5 0.9 .
1 49 ALA 3 16 18 12 66.7 1.2 >sigma
1 50 ASP 4 14 16 7 43.8 -0.1 .
1 51 THR 4 28 30 20 66.7 1.2 >sigma
1 52 PHE 7 45 52 25 48.1 0.1 .
1 53 VAL 5 22 28 17 60.7 0.8 .
1 54 PHE 7 16 15 6 40.0 -0.3 .
1 55 SER 4 8 10 7 70.0 1.4 >sigma
1 56 ALA 3 12 15 10 66.7 1.2 >sigma
1 57 ARG 7 6 8 4 50.0 0.2 .
1 58 GLU 5 7 15 5 33.3 -0.7 .
1 59 ASP 4 10 24 8 33.3 -0.7 .
1 60 SER 4 6 11 4 36.4 -0.5 .
1 61 TYR 6 14 35 9 25.7 -1.1 >sigma
1 62 ARG 7 18 36 16 44.4 -0.1 .
1 63 THR 4 17 21 12 57.1 0.6 .
1 64 ASP 4 6 8 5 62.5 0.9 .
1 65 THR 4 4 9 3 33.3 -0.7 .
1 66 ALA 3 9 13 8 61.5 0.9 .
1 67 VAL 5 17 28 13 46.4 0.0 .
1 68 PHE 7 21 32 14 43.8 -0.1 .
1 69 ASN 6 14 21 9 42.9 -0.2 .
1 70 ASP 4 15 15 7 46.7 0.1 .
1 71 LEU 7 24 21 9 42.9 -0.2 .
1 72 ILE 6 39 48 20 41.7 -0.2 .
1 73 LEU 7 22 30 13 43.3 -0.1 .
1 74 ASP 4 9 8 5 62.5 0.9 .
1 75 PHE 7 30 41 21 51.2 0.3 .
1 76 GLU 5 7 16 4 25.0 -1.2 >sigma
1 77 ALA 3 18 24 11 45.8 0.0 .
1 78 SER 4 7 14 5 35.7 -0.6 .
1 79 GLU 5 14 21 13 61.9 0.9 .
1 80 ASP 4 16 21 12 57.1 0.6 .
1 81 ARG 7 19 21 11 52.4 0.4 .
1 82 ILE 6 28 38 20 52.6 0.4 .
1 83 ASP 4 24 27 19 70.4 1.4 >sigma
1 84 LEU 7 10 20 6 30.0 -0.9 .
1 85 SER 4 13 15 7 46.7 0.1 .
1 86 ALA 3 14 11 7 63.6 1.0 >sigma
1 87 LEU 7 20 17 10 58.8 0.7 .
1 88 GLY 3 7 6 3 50.0 0.2 .
1 89 PHE 7 16 10 7 70.0 1.4 >sigma
1 90 SER 4 6 8 6 75.0 1.6 >sigma
1 91 GLY 3 11 9 6 66.7 1.2 >sigma
1 92 LEU 7 7 10 4 40.0 -0.3 .
1 93 GLY 3 11 15 9 60.0 0.8 .
1 94 ASP 4 7 11 6 54.5 0.5 .
1 95 GLY 3 16 20 11 55.0 0.5 .
1 96 TYR 6 11 17 10 58.8 0.7 .
1 97 GLY 3 6 9 5 55.6 0.6 .
1 98 GLY 3 7 9 5 55.6 0.6 .
1 99 THR 4 22 20 12 60.0 0.8 .
1 100 LEU 7 17 28 9 32.1 -0.8 .
1 101 LEU 7 11 22 8 36.4 -0.5 .
1 102 LEU 7 16 23 8 34.8 -0.6 .
1 103 LYS 7 11 16 8 50.0 0.2 .
1 104 THR 4 20 19 15 78.9 1.9 >sigma
1 105 ASN 6 17 28 9 32.1 -0.8 .
1 106 ALA 3 4 9 3 33.3 -0.7 .
1 107 GLU 5 10 16 7 43.8 -0.1 .
1 108 GLY 3 14 18 12 66.7 1.2 >sigma
1 109 THR 4 10 11 8 72.7 1.5 >sigma
1 110 ARG 7 18 30 12 40.0 -0.3 .
1 111 THR 4 21 27 14 51.9 0.3 .
1 112 TYR 6 26 20 9 45.0 -0.0 .
1 113 LEU 7 19 32 9 28.1 -1.0 .
1 114 LYS 7 8 15 7 46.7 0.1 .
1 115 SER 4 8 19 5 26.3 -1.1 >sigma
1 116 PHE 7 5 12 3 25.0 -1.2 >sigma
1 117 GLU 5 5 19 4 21.1 -1.4 >sigma
1 118 ALA 3 9 16 7 43.8 -0.1 .
1 119 ASP 4 8 17 6 35.3 -0.6 .
1 120 ALA 3 8 14 5 35.7 -0.6 .
1 121 GLU 5 10 10 7 70.0 1.4 >sigma
1 122 GLY 3 9 11 6 54.5 0.5 .
1 123 ARG 7 9 28 6 21.4 -1.4 >sigma
1 124 ARG 7 8 26 4 15.4 -1.7 >sigma
1 125 PHE 7 9 24 4 16.7 -1.6 >sigma
1 126 GLU 5 12 17 5 29.4 -0.9 .
1 127 VAL 5 24 28 11 39.3 -0.4 .
1 128 ALA 3 22 23 15 65.2 1.1 >sigma
1 129 LEU 7 25 50 17 34.0 -0.7 .
1 130 ASP 4 12 20 6 30.0 -0.9 .
1 131 GLY 3 5 8 3 37.5 -0.5 .
1 132 ASP 4 2 6 2 33.3 -0.7 .
1 133 HIS 6 3 12 1 8.3 -2.1 >sigma
1 134 THR 4 5 9 3 33.3 -0.7 .
1 135 GLY 3 5 7 5 71.4 1.4 >sigma
1 136 ASP 4 7 8 5 62.5 0.9 .
1 137 LEU 7 14 13 6 46.2 0.0 .
1 138 SER 4 12 17 8 47.1 0.1 .
1 139 ALA 3 11 9 5 55.6 0.6 .
1 140 ALA 3 8 12 7 58.3 0.7 .
1 141 ASN 6 22 23 9 39.1 -0.4 .
1 142 VAL 5 17 29 10 34.5 -0.6 .
1 143 VAL 5 16 29 11 37.9 -0.4 .
1 144 PHE 7 16 8 6 75.0 1.6 >sigma
1 145 ALA 3 12 17 9 52.9 0.4 .
1 146 ALA 3 7 7 4 57.1 0.6 .
1 147 THR 4 3 6 2 33.3 -0.7 .
1 148 GLY 3 2 7 2 28.6 -1.0 .
1 149 THR 4 3 6 3 50.0 0.2 .
1 150 THR 4 4 10 4 40.0 -0.3 .
1 151 THR 4 2 9 2 22.2 -1.3 >sigma
1 152 GLU 5 5 9 5 55.6 0.6 .
1 153 LEU 7 6 6 4 66.7 1.2 >sigma
1 154 GLU 5 5 7 3 42.9 -0.2 .
1 155 VAL 5 3 9 3 33.3 -0.7 .
1 156 LEU 7 4 6 3 50.0 0.2 .
1 157 GLY 3 3 4 2 50.0 0.2 .
1 158 ASP 4 1 6 1 16.7 -1.6 >sigma
1 159 SER 4 0 6 0 0.0 -2.6 >sigma
1 160 GLY 3 1 6 1 16.7 -1.6 >sigma
1 161 THR 4 3 10 3 30.0 -0.9 .
1 162 GLN 7 0 8 0 0.0 -2.6 >sigma
1 163 ALA 3 1 7 1 14.3 -1.8 >sigma
1 164 GLY 3 3 5 3 60.0 0.8 .
1 165 ALA 3 3 5 3 60.0 0.8 .
1 166 ILE 6 2 7 2 28.6 -1.0 .
1 167 VAL 5 1 5 1 20.0 -1.4 >sigma
stop_
save_