Result table
| image | mrblock_id | pdb_id | cing | stage | program | type | subtype | subsubtype |
|
|
469017 | 1aa9 RC | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1aa9
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 1
_NOE_completeness_stats.Residue_count 173
_NOE_completeness_stats.Total_atom_count 2766
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 941
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 29.9
_NOE_completeness_stats.Constraint_unexpanded_count 2360
_NOE_completeness_stats.Constraint_count 2362
_NOE_completeness_stats.Constraint_exp_unfiltered_count 3365
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 131
_NOE_completeness_stats.Constraint_intraresidue_count 623
_NOE_completeness_stats.Constraint_surplus_count 11
_NOE_completeness_stats.Constraint_observed_count 1597
_NOE_completeness_stats.Constraint_expected_count 3357
_NOE_completeness_stats.Constraint_matched_count 1004
_NOE_completeness_stats.Constraint_unmatched_count 593
_NOE_completeness_stats.Constraint_exp_nonobs_count 2353
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 674 927 466 50.3 1.0 >sigma
medium-range 358 710 174 24.5 -0.4 .
long-range 565 1720 364 21.2 -0.6 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 223 80 0 6 0 36 7 0 6 0 . 25 35.9 35.9
shell 2.00 2.50 378 182 0 38 0 89 11 0 7 0 . 37 48.1 43.6
shell 2.50 3.00 589 223 0 11 0 114 15 0 8 0 . 75 37.9 40.8
shell 3.00 3.50 845 231 0 0 0 89 13 0 19 0 . 110 27.3 35.2
shell 3.50 4.00 1322 288 0 0 0 44 0 0 29 0 . 215 21.8 29.9
shell 4.00 4.50 2031 242 0 0 0 0 0 0 30 0 . 212 11.9 23.1
shell 4.50 5.00 2598 214 0 0 0 0 0 0 32 0 . 182 8.2 18.3
shell 5.00 5.50 2972 88 0 0 0 0 0 0 2 0 . 86 3.0 14.1
shell 5.50 6.00 3622 40 0 0 0 0 0 0 0 0 . 40 1.1 10.9
shell 6.00 6.50 4028 9 0 0 0 0 0 0 0 0 . 9 0.2 8.6
shell 6.50 7.00 4520 0 0 0 0 0 0 0 0 0 . 0 0.0 6.9
shell 7.00 7.50 4928 0 0 0 0 0 0 0 0 0 . 0 0.0 5.7
shell 7.50 8.00 5568 0 0 0 0 0 0 0 0 0 . 0 0.0 4.7
shell 8.00 8.50 5968 0 0 0 0 0 0 0 0 0 . 0 0.0 4.0
shell 8.50 9.00 6335 0 0 0 0 0 0 0 0 0 . 0 0.0 3.5
sums . . 45927 1597 0 55 0 372 46 0 133 0 . 991 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 6 23 6 26.1 -0.5 .
1 2 THR 4 17 22 14 63.6 2.1 >sigma
1 3 GLU 5 16 30 11 36.7 0.2 .
1 4 TYR 6 43 60 32 53.3 1.4 >sigma
1 5 LYS 7 18 44 8 18.2 -1.0 >sigma
1 6 LEU 7 25 76 15 19.7 -0.9 .
1 7 VAL 5 29 79 20 25.3 -0.5 .
1 8 VAL 5 22 61 16 26.2 -0.5 .
1 9 VAL 5 17 58 13 22.4 -0.7 .
1 10 GLY 3 13 27 8 29.6 -0.2 .
1 11 ALA 3 25 29 17 58.6 1.7 >sigma
1 12 GLY 3 12 19 8 42.1 0.6 .
1 13 GLY 3 11 13 10 76.9 2.9 >sigma
1 14 VAL 5 36 66 25 37.9 0.3 .
1 15 GLY 3 16 22 10 45.5 0.8 .
1 16 LYS 7 30 68 19 27.9 -0.4 .
1 17 SER 4 17 30 12 40.0 0.5 .
1 18 ALA 3 26 30 18 60.0 1.8 >sigma
1 19 LEU 7 22 70 16 22.9 -0.7 .
1 20 THR 4 23 48 18 37.5 0.3 .
1 21 ILE 6 33 61 22 36.1 0.2 .
1 22 GLN 7 15 55 12 21.8 -0.8 .
1 23 LEU 7 28 60 17 28.3 -0.3 .
1 24 ILE 6 20 69 17 24.6 -0.6 .
1 25 GLN 7 17 33 13 39.4 0.4 .
1 26 ASN 6 12 14 8 57.1 1.6 >sigma
1 27 HIS 6 13 14 8 57.1 1.6 >sigma
1 28 PHE 7 27 40 19 47.5 1.0 .
1 29 VAL 5 15 38 9 23.7 -0.6 .
1 30 ASP 4 11 18 7 38.9 0.4 .
1 31 GLU 5 7 17 6 35.3 0.1 .
1 32 TYR 6 23 39 14 35.9 0.2 .
1 33 ASP 4 13 21 7 33.3 0.0 .
1 34 PRO 5 7 16 1 6.3 -1.8 >sigma
1 35 THR 4 8 26 5 19.2 -0.9 .
1 36 ILE 6 17 31 10 32.3 -0.1 .
1 37 GLU 5 13 21 9 42.9 0.7 .
1 38 ASP 4 9 16 6 37.5 0.3 .
1 39 SER 4 11 15 8 53.3 1.4 >sigma
1 40 TYR 6 33 53 19 35.8 0.2 .
1 41 ARG 7 20 20 9 45.0 0.8 .
1 42 LYS 7 23 27 12 44.4 0.8 .
1 43 GLN 7 20 41 12 29.3 -0.3 .
1 44 VAL 5 13 47 10 21.3 -0.8 .
1 45 VAL 5 19 25 9 36.0 0.2 .
1 46 ILE 6 32 61 19 31.1 -0.1 .
1 47 ASP 4 16 20 7 35.0 0.1 .
1 48 GLY 3 11 8 6 75.0 2.8 >sigma
1 49 GLU 5 13 26 12 46.2 0.9 .
1 50 THR 4 13 28 9 32.1 -0.1 .
1 51 CYS 4 26 32 19 59.4 1.8 >sigma
1 52 LEU 7 17 57 14 24.6 -0.6 .
1 53 LEU 7 15 76 11 14.5 -1.3 >sigma
1 54 ASP 4 21 32 12 37.5 0.3 .
1 55 ILE 6 30 82 18 22.0 -0.8 .
1 56 LEU 7 24 66 14 21.2 -0.8 .
1 57 ASP 4 17 31 12 38.7 0.4 .
1 58 THR 4 10 52 5 9.6 -1.6 >sigma
1 59 ALA 3 15 25 11 44.0 0.7 .
1 60 GLY 3 10 19 7 36.8 0.2 .
1 61 GLN 7 6 18 3 16.7 -1.1 >sigma
1 62 GLU 5 8 30 4 13.3 -1.3 >sigma
1 63 GLU 5 6 24 6 25.0 -0.6 .
1 64 TYR 6 13 39 11 28.2 -0.3 .
1 65 SER 4 13 27 6 22.2 -0.7 .
1 66 ALA 3 14 25 9 36.0 0.2 .
1 67 MET 6 12 50 10 20.0 -0.9 .
1 68 ARG 7 12 92 6 6.5 -1.8 >sigma
1 69 ASP 4 5 18 5 27.8 -0.4 .
1 70 GLN 7 10 13 7 53.8 1.4 >sigma
1 71 TYR 6 18 61 11 18.0 -1.0 >sigma
1 72 MET 6 22 62 13 21.0 -0.8 .
1 73 ARG 7 11 15 8 53.3 1.4 >sigma
1 74 THR 4 11 24 7 29.2 -0.3 .
1 75 GLY 3 21 28 9 32.1 -0.1 .
1 76 GLU 5 18 36 12 33.3 0.0 .
1 77 GLY 3 23 34 14 41.2 0.5 .
1 78 PHE 7 48 85 32 37.6 0.3 .
1 79 LEU 7 33 81 16 19.8 -0.9 .
1 80 CYS 4 17 43 9 20.9 -0.8 .
1 81 VAL 5 22 70 14 20.0 -0.9 .
1 82 PHE 7 40 93 22 23.7 -0.6 .
1 83 ALA 3 35 41 21 51.2 1.2 >sigma
1 84 ILE 6 34 65 20 30.8 -0.2 .
1 85 ASN 6 22 42 13 31.0 -0.2 .
1 86 ASN 6 26 32 11 34.4 0.1 .
1 87 THR 4 20 31 13 41.9 0.6 .
1 88 LYS 7 15 23 9 39.1 0.4 .
1 89 SER 4 22 38 12 31.6 -0.1 .
1 90 PHE 7 54 69 25 36.2 0.2 .
1 91 GLU 5 15 18 8 44.4 0.8 .
1 92 ASP 4 20 23 13 56.5 1.6 >sigma
1 93 ILE 6 26 74 15 20.3 -0.9 .
1 94 HIS 6 18 25 8 32.0 -0.1 .
1 95 GLN 7 15 24 9 37.5 0.3 .
1 96 TYR 6 37 53 18 34.0 0.1 .
1 97 ARG 7 24 66 14 21.2 -0.8 .
1 98 GLU 5 10 28 7 25.0 -0.6 .
1 99 GLN 7 14 35 5 14.3 -1.3 >sigma
1 100 ILE 6 42 72 27 37.5 0.3 .
1 101 LYS 7 6 49 5 10.2 -1.6 >sigma
1 102 ARG 7 4 32 3 9.4 -1.6 >sigma
1 103 VAL 5 12 38 8 21.1 -0.8 .
1 104 LYS 7 11 48 8 16.7 -1.1 >sigma
1 105 ASP 4 9 15 4 26.7 -0.4 .
1 106 SER 4 11 14 8 57.1 1.6 >sigma
1 107 ASP 4 8 21 7 33.3 0.0 .
1 108 ASP 4 8 9 5 55.6 1.5 >sigma
1 109 VAL 5 12 43 8 18.6 -1.0 .
1 110 PRO 5 5 42 5 11.9 -1.4 >sigma
1 111 MET 6 21 56 9 16.1 -1.2 >sigma
1 112 VAL 5 21 78 15 19.2 -0.9 .
1 113 LEU 7 30 95 16 16.8 -1.1 >sigma
1 114 VAL 5 26 72 18 25.0 -0.6 .
1 115 GLY 3 21 37 13 35.1 0.1 .
1 116 ASN 6 22 47 14 29.8 -0.2 .
1 117 LYS 7 16 32 8 25.0 -0.6 .
1 118 CYS 4 19 21 10 47.6 1.0 .
1 119 ASP 4 9 13 6 46.2 0.9 .
1 120 LEU 7 9 12 6 50.0 1.1 >sigma
1 121 ALA 3 10 15 7 46.7 0.9 .
1 122 ALA 3 10 19 7 36.8 0.2 .
1 123 ARG 7 16 33 9 27.3 -0.4 .
1 124 THR 4 18 21 12 57.1 1.6 >sigma
1 125 VAL 5 31 61 20 32.8 -0.0 .
1 126 GLU 5 13 24 6 25.0 -0.6 .
1 127 SER 4 10 14 5 35.7 0.2 .
1 128 ARG 7 8 24 6 25.0 -0.6 .
1 129 GLN 7 23 42 12 28.6 -0.3 .
1 130 ALA 3 29 35 18 51.4 1.2 >sigma
1 131 GLN 7 18 26 9 34.6 0.1 .
1 132 ASP 4 17 21 9 42.9 0.7 .
1 133 LEU 7 29 58 12 20.7 -0.8 .
1 134 ALA 3 35 40 25 62.5 2.0 >sigma
1 135 ARG 7 17 14 4 28.6 -0.3 .
1 136 SER 4 12 20 7 35.0 0.1 .
1 137 TYR 6 34 62 19 30.6 -0.2 .
1 138 GLY 3 15 13 8 61.5 1.9 >sigma
1 139 ILE 6 32 66 23 34.8 0.1 .
1 140 PRO 5 7 23 6 26.1 -0.5 .
1 141 TYR 6 50 54 31 57.4 1.6 >sigma
1 142 ILE 6 29 57 17 29.8 -0.2 .
1 143 GLU 5 21 29 11 37.9 0.3 .
1 144 THR 4 20 39 13 33.3 0.0 .
1 145 SER 4 26 29 16 55.2 1.5 >sigma
1 146 ALA 3 32 39 21 53.8 1.4 >sigma
1 147 LYS 7 19 22 14 63.6 2.1 >sigma
1 148 THR 4 11 21 6 28.6 -0.3 .
1 149 ARG 7 15 39 8 20.5 -0.9 .
1 150 GLN 7 17 18 10 55.6 1.5 >sigma
1 151 GLY 3 15 28 12 42.9 0.7 .
1 152 VAL 5 23 70 18 25.7 -0.5 .
1 153 GLU 5 20 22 12 54.5 1.4 >sigma
1 154 ASP 4 22 24 12 50.0 1.1 >sigma
1 155 ALA 3 27 48 20 41.7 0.6 .
1 156 PHE 7 49 79 30 38.0 0.3 .
1 157 TYR 6 40 46 23 50.0 1.1 >sigma
1 158 THR 4 13 37 11 29.7 -0.2 .
1 159 LEU 7 19 89 15 16.9 -1.1 >sigma
1 160 VAL 5 18 59 16 27.1 -0.4 .
1 161 ARG 7 8 38 6 15.8 -1.2 >sigma
1 162 GLU 5 12 32 8 25.0 -0.6 .
1 163 ILE 6 28 68 23 33.8 0.0 .
1 164 ARG 7 18 57 14 24.6 -0.6 .
1 165 GLN 7 7 28 4 14.3 -1.3 >sigma
1 166 HIS 6 9 36 6 16.7 -1.1 >sigma
1 167 LYS 7 4 43 4 9.3 -1.6 >sigma
1 168 LEU 7 2 44 1 2.3 -2.1 >sigma
1 169 ARG 7 2 37 2 5.4 -1.9 >sigma
1 170 LYS 7 1 28 1 3.6 -2.0 >sigma
1 171 LEU 7 0 15 0 0.0 -2.2 >sigma
stop_
save_