Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
416293 | 2diz RC | 11107 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2diz
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 117
_NOE_completeness_stats.Total_atom_count 1783
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 624
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 69.6
_NOE_completeness_stats.Constraint_unexpanded_count 2923
_NOE_completeness_stats.Constraint_count 2923
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1920
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 47
_NOE_completeness_stats.Constraint_intraresidue_count 568
_NOE_completeness_stats.Constraint_surplus_count 204
_NOE_completeness_stats.Constraint_observed_count 2104
_NOE_completeness_stats.Constraint_expected_count 1748
_NOE_completeness_stats.Constraint_matched_count 1216
_NOE_completeness_stats.Constraint_unmatched_count 888
_NOE_completeness_stats.Constraint_exp_nonobs_count 532
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 604 495 337 68.1 -0.8 .
medium-range 508 371 267 72.0 1.0 .
long-range 992 882 612 69.4 -0.2 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 24 21 0 6 11 3 0 1 0 0 . 0 87.5 87.5
shell 2.00 2.50 230 206 3 35 90 62 14 2 0 0 . 0 89.6 89.4
shell 2.50 3.00 318 267 0 5 92 106 45 17 2 0 . 0 84.0 86.4
shell 3.00 3.50 478 342 0 0 19 117 130 59 16 1 . 0 71.5 79.6
shell 3.50 4.00 698 380 0 0 1 42 159 126 47 5 . 0 54.4 69.6
shell 4.00 4.50 1137 461 0 0 0 0 63 228 144 26 . 0 40.5 58.1
shell 4.50 5.00 1514 289 0 0 0 0 5 63 162 59 . 0 19.1 44.7
shell 5.00 5.50 1830 129 0 0 0 0 0 3 40 86 . 0 7.0 33.6
shell 5.50 6.00 2101 8 0 0 0 0 0 0 3 5 . 0 0.4 25.2
shell 6.00 6.50 2318 1 0 0 0 0 0 0 0 1 . 0 0.0 19.8
shell 6.50 7.00 2690 0 0 0 0 0 0 0 0 0 . 0 0.0 15.8
shell 7.00 7.50 2816 0 0 0 0 0 0 0 0 0 . 0 0.0 13.0
shell 7.50 8.00 3042 0 0 0 0 0 0 0 0 0 . 0 0.0 11.0
shell 8.00 8.50 3392 0 0 0 0 0 0 0 0 0 . 0 0.0 9.3
shell 8.50 9.00 3563 0 0 0 0 0 0 0 0 0 . 0 0.0 8.0
sums . . 26151 2104 3 46 213 330 416 499 414 183 . 0 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 0 2 0 0.0 -3.4 >sigma
1 2 SER 4 0 6 0 0.0 -3.4 >sigma
1 3 SER 4 0 8 0 0.0 -3.4 >sigma
1 4 GLY 3 0 7 0 0.0 -3.4 >sigma
1 5 SER 4 0 7 0 0.0 -3.4 >sigma
1 6 SER 4 5 20 1 5.0 -3.2 >sigma
1 7 GLY 3 7 8 3 37.5 -1.5 >sigma
1 8 THR 4 22 29 15 51.7 -0.7 .
1 9 VAL 5 57 44 29 65.9 -0.0 .
1 10 LEU 7 44 42 19 45.2 -1.1 >sigma
1 11 ALA 3 18 12 6 50.0 -0.8 .
1 12 LEU 7 64 52 42 80.8 0.8 .
1 13 THR 4 40 21 18 85.7 1.0 >sigma
1 14 GLU 5 24 19 14 73.7 0.4 .
1 15 ASN 6 12 11 6 54.5 -0.6 .
1 16 ASN 6 28 22 15 68.2 0.1 .
1 17 PHE 7 73 60 38 63.3 -0.1 .
1 18 ASP 4 21 19 10 52.6 -0.7 .
1 19 ASP 4 15 14 9 64.3 -0.1 .
1 20 THR 4 41 32 20 62.5 -0.2 .
1 21 ILE 6 71 57 44 77.2 0.6 .
1 22 ALA 3 26 22 16 72.7 0.3 .
1 23 GLU 5 7 14 6 42.9 -1.2 >sigma
1 24 GLY 3 10 9 7 77.8 0.6 .
1 25 ILE 6 63 58 39 67.2 0.1 .
1 26 THR 4 61 38 31 81.6 0.8 .
1 27 PHE 7 86 70 50 71.4 0.3 .
1 28 ILE 6 81 64 51 79.7 0.7 .
1 29 LYS 7 80 73 43 58.9 -0.4 .
1 30 PHE 7 93 75 63 84.0 0.9 .
1 31 TYR 6 60 49 33 67.3 0.1 .
1 32 ALA 3 36 34 30 88.2 1.1 >sigma
1 33 PRO 5 26 25 20 80.0 0.7 .
1 34 TRP 10 33 29 25 86.2 1.0 >sigma
1 35 CYS 4 22 22 16 72.7 0.3 .
1 36 GLY 3 11 13 7 53.8 -0.6 .
1 37 HIS 6 8 12 6 50.0 -0.8 .
1 38 CYS 4 23 27 17 63.0 -0.2 .
1 39 LYS 7 24 18 11 61.1 -0.3 .
1 40 THR 4 21 16 10 62.5 -0.2 .
1 41 LEU 7 55 64 37 57.8 -0.4 .
1 42 ALA 3 27 17 10 58.8 -0.4 .
1 43 PRO 5 19 18 13 72.2 0.3 .
1 44 THR 4 48 31 21 67.7 0.1 .
1 45 TRP 10 106 86 64 74.4 0.4 .
1 46 GLU 5 39 30 20 66.7 0.0 .
1 47 GLU 5 39 29 22 75.9 0.5 .
1 48 LEU 7 79 63 48 76.2 0.5 .
1 49 SER 4 42 28 24 85.7 1.0 >sigma
1 50 LYS 7 23 23 13 56.5 -0.5 .
1 51 LYS 7 36 47 28 59.6 -0.3 .
1 52 GLU 5 16 10 10 100.0 1.8 >sigma
1 53 PHE 7 74 57 48 84.2 0.9 .
1 54 PRO 5 14 14 11 78.6 0.6 .
1 55 GLY 3 5 6 4 66.7 0.0 .
1 56 LEU 7 39 43 24 55.8 -0.5 .
1 57 ALA 3 16 16 11 68.8 0.1 .
1 58 GLY 3 7 4 3 75.0 0.5 .
1 59 VAL 5 58 45 39 86.7 1.1 >sigma
1 60 LYS 7 47 38 26 68.4 0.1 .
1 61 ILE 6 77 60 46 76.7 0.5 .
1 62 ALA 3 59 41 34 82.9 0.9 .
1 63 GLU 5 56 37 29 78.4 0.6 .
1 64 VAL 5 62 52 36 69.2 0.2 .
1 65 ASP 4 31 22 14 63.6 -0.1 .
1 66 CYS 4 38 22 17 77.3 0.6 .
1 67 THR 4 33 24 19 79.2 0.7 .
1 68 ALA 3 22 13 10 76.9 0.6 .
1 69 GLU 5 36 25 19 76.0 0.5 .
1 70 ARG 7 20 15 10 66.7 0.0 .
1 71 ASN 6 20 16 8 50.0 -0.8 .
1 72 ILE 6 76 52 42 80.8 0.8 .
1 73 CYS 4 43 31 26 83.9 0.9 .
1 74 SER 4 21 16 10 62.5 -0.2 .
1 75 LYS 7 31 20 16 80.0 0.7 .
1 76 TYR 6 66 38 30 78.9 0.7 .
1 77 SER 4 12 8 6 75.0 0.5 .
1 78 VAL 5 61 38 35 92.1 1.3 >sigma
1 79 ARG 7 13 9 6 66.7 0.0 .
1 80 GLY 3 16 10 9 90.0 1.2 >sigma
1 81 TYR 6 46 34 27 79.4 0.7 .
1 82 PRO 5 34 37 21 56.8 -0.5 .
1 83 THR 4 49 35 28 80.0 0.7 .
1 84 LEU 7 70 65 44 67.7 0.1 .
1 85 LEU 7 65 50 41 82.0 0.8 .
1 86 LEU 7 86 71 52 73.2 0.4 .
1 87 PHE 7 87 68 51 75.0 0.5 .
1 88 ARG 7 42 39 27 69.2 0.2 .
1 89 GLY 3 13 7 4 57.1 -0.5 .
1 90 GLY 3 18 20 13 65.0 -0.1 .
1 91 LYS 7 19 13 6 46.2 -1.0 >sigma
1 92 LYS 7 34 23 15 65.2 -0.0 .
1 93 VAL 5 36 40 22 55.0 -0.6 .
1 94 SER 4 33 20 16 80.0 0.7 .
1 95 GLU 5 23 17 14 82.4 0.8 .
1 96 HIS 6 50 35 29 82.9 0.9 .
1 97 SER 4 4 5 4 80.0 0.7 .
1 98 GLY 3 8 8 6 75.0 0.5 .
1 99 GLY 3 7 9 5 55.6 -0.5 .
1 100 ARG 7 21 32 15 46.9 -1.0 .
1 101 ASP 4 20 18 12 66.7 0.0 .
1 102 LEU 7 53 48 33 68.8 0.1 .
1 103 ASP 4 24 21 15 71.4 0.3 .
1 104 SER 4 25 24 14 58.3 -0.4 .
1 105 LEU 7 60 62 39 62.9 -0.2 .
1 106 HIS 6 58 39 31 79.5 0.7 .
1 107 ARG 7 24 25 14 56.0 -0.5 .
1 108 PHE 7 52 55 33 60.0 -0.3 .
1 109 VAL 5 63 55 38 69.1 0.2 .
1 110 LEU 7 57 42 30 71.4 0.3 .
1 111 SER 4 21 16 8 50.0 -0.8 .
1 112 GLN 7 40 30 19 63.3 -0.1 .
1 113 ALA 3 34 29 20 69.0 0.2 .
1 114 LYS 7 18 16 10 62.5 -0.2 .
1 115 ASP 4 10 3 3 100.0 1.8 >sigma
1 116 GLU 5 6 4 3 75.0 0.5 .
1 117 LEU 7 3 3 2 66.7 0.0 .
stop_
save_