Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
412912 | 2bw2 RC | 6731 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2bw2
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 25
_NOE_completeness_stats.Residue_count 140
_NOE_completeness_stats.Total_atom_count 2248
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 783
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 49.8
_NOE_completeness_stats.Constraint_unexpanded_count 2842
_NOE_completeness_stats.Constraint_count 2842
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2450
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 707
_NOE_completeness_stats.Constraint_surplus_count 277
_NOE_completeness_stats.Constraint_observed_count 1858
_NOE_completeness_stats.Constraint_expected_count 2207
_NOE_completeness_stats.Constraint_matched_count 1100
_NOE_completeness_stats.Constraint_unmatched_count 758
_NOE_completeness_stats.Constraint_exp_nonobs_count 1107
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 663 636 400 62.9 0.9 .
medium-range 482 512 270 52.7 0.1 .
long-range 713 1059 430 40.6 -0.9 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 25 16 0 2 3 8 2 1 0 0 . 0 64.0 64.0
shell 2.00 2.50 272 180 2 25 71 50 27 5 0 0 . 0 66.2 66.0
shell 2.50 3.00 394 266 0 13 83 88 61 16 4 1 . 0 67.5 66.9
shell 3.00 3.50 628 299 0 2 41 119 101 28 5 3 . 0 47.6 57.7
shell 3.50 4.00 888 339 0 0 9 89 158 67 15 1 . 0 38.2 49.8
shell 4.00 4.50 1479 396 0 0 0 17 163 172 41 3 . 0 26.8 40.6
shell 4.50 5.00 1923 247 0 0 0 0 13 128 89 17 . 0 12.8 31.1
shell 5.00 5.50 2237 90 0 0 0 0 1 7 59 23 . 0 4.0 23.4
shell 5.50 6.00 2674 25 0 0 0 0 0 2 13 10 . 0 0.9 17.7
shell 6.00 6.50 2912 0 0 0 0 0 0 0 0 0 . 0 0.0 13.8
shell 6.50 7.00 3110 0 0 0 0 0 0 0 0 0 . 0 0.0 11.2
shell 7.00 7.50 3391 0 0 0 0 0 0 0 0 0 . 0 0.0 9.3
shell 7.50 8.00 3809 0 0 0 0 0 0 0 0 0 . 0 0.0 7.8
shell 8.00 8.50 3975 0 0 0 0 0 0 0 0 0 . 0 0.0 6.7
shell 8.50 9.00 4227 0 0 0 0 0 0 0 0 0 . 0 0.0 5.8
sums . . 31944 1858 2 42 207 371 526 426 226 58 . 0 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 ALA 3 0 2 0 0.0 -3.0 >sigma
1 2 GLU 5 4 7 4 57.1 0.4 .
1 3 VAL 5 10 10 7 70.0 1.1 >sigma
1 4 GLU 5 6 8 4 50.0 -0.1 .
1 5 HIS 6 9 11 6 54.5 0.2 .
1 6 TYR 6 11 12 8 66.7 0.9 .
1 7 GLU 5 11 15 7 46.7 -0.3 .
1 8 PRO 5 26 35 16 45.7 -0.3 .
1 9 LEU 7 37 41 21 51.2 0.0 .
1 10 GLN 7 23 21 13 61.9 0.6 .
1 11 VAL 5 55 52 32 61.5 0.6 .
1 12 HIS 6 22 19 11 57.9 0.4 .
1 13 VAL 5 46 47 28 59.6 0.5 .
1 14 GLN 7 22 42 17 40.5 -0.6 .
1 15 LEU 7 46 64 30 46.9 -0.3 .
1 16 GLU 5 32 43 17 39.5 -0.7 .
1 17 LYS 7 31 49 23 46.9 -0.3 .
1 18 VAL 5 22 43 15 34.9 -1.0 .
1 19 TYR 6 33 39 20 51.3 0.0 .
1 20 LEU 7 24 37 15 40.5 -0.6 .
1 21 ASP 4 22 28 13 46.4 -0.3 .
1 22 GLY 3 22 23 10 43.5 -0.5 .
1 23 ASP 4 14 14 5 35.7 -0.9 .
1 24 VAL 5 28 31 12 38.7 -0.7 .
1 25 SER 4 33 19 18 94.7 2.6 >sigma
1 26 ILE 6 36 28 17 60.7 0.6 .
1 27 GLU 5 27 32 19 59.4 0.5 .
1 28 HIS 6 18 15 10 66.7 0.9 .
1 29 LYS 7 32 29 20 69.0 1.1 >sigma
1 30 HIS 6 13 12 6 50.0 -0.1 .
1 31 GLU 5 29 21 14 66.7 0.9 .
1 32 LYS 7 32 40 18 45.0 -0.4 .
1 33 VAL 5 61 47 35 74.5 1.4 >sigma
1 34 PHE 7 19 19 10 52.6 0.1 .
1 35 SER 4 20 14 9 64.3 0.8 .
1 36 MET 6 35 38 20 52.6 0.1 .
1 37 ASP 4 14 16 5 31.3 -1.2 >sigma
1 38 ASP 4 20 17 10 58.8 0.5 .
1 39 PHE 7 54 72 35 48.6 -0.2 .
1 40 TRP 10 37 55 20 36.4 -0.9 .
1 41 ALA 3 21 15 11 73.3 1.3 >sigma
1 42 ALA 3 23 15 13 86.7 2.1 >sigma
1 43 TYR 6 35 46 21 45.7 -0.3 .
1 44 ALA 3 22 11 9 81.8 1.8 >sigma
1 45 GLY 3 6 14 4 28.6 -1.3 >sigma
1 46 TRP 10 36 77 21 27.3 -1.4 >sigma
1 47 THR 4 24 18 9 50.0 -0.1 .
1 48 LEU 7 46 45 26 57.8 0.4 .
1 49 VAL 5 37 38 21 55.3 0.2 .
1 50 GLU 5 38 32 25 78.1 1.6 >sigma
1 51 GLN 7 53 47 33 70.2 1.1 >sigma
1 52 LYS 7 29 27 16 59.3 0.5 .
1 53 LYS 7 13 14 8 57.1 0.4 .
1 54 GLY 3 9 10 6 60.0 0.5 .
1 55 TYR 6 45 41 26 63.4 0.7 .
1 56 VAL 5 66 60 37 61.7 0.6 .
1 57 LEU 7 55 58 33 56.9 0.3 .
1 58 PHE 7 33 72 19 26.4 -1.5 >sigma
1 59 ARG 7 42 61 24 39.3 -0.7 .
1 60 LYS 7 38 51 19 37.3 -0.8 .
1 61 GLN 7 21 35 13 37.1 -0.8 .
1 62 MET 6 9 18 6 33.3 -1.1 >sigma
1 63 ASP 4 0 9 0 0.0 -3.0 >sigma
1 64 ASP 4 2 14 2 14.3 -2.2 >sigma
1 65 ILE 6 39 66 26 39.4 -0.7 .
1 66 SER 4 13 21 8 38.1 -0.8 .
1 67 PRO 5 12 16 7 43.8 -0.4 .
1 68 LEU 7 28 25 12 48.0 -0.2 .
1 69 SER 4 10 24 7 29.2 -1.3 >sigma
1 70 LYS 7 18 30 9 30.0 -1.3 >sigma
1 71 VAL 5 25 22 14 63.6 0.7 .
1 72 ASN 6 17 21 9 42.9 -0.5 .
1 73 GLY 3 4 11 2 18.2 -2.0 >sigma
1 74 TYR 6 24 38 8 21.1 -1.8 >sigma
1 75 ILE 6 38 62 24 38.7 -0.7 .
1 76 GLY 3 10 23 6 26.1 -1.5 >sigma
1 77 VAL 5 36 58 24 41.4 -0.6 .
1 78 SER 4 21 20 15 75.0 1.4 >sigma
1 79 ASP 4 14 12 7 58.3 0.4 .
1 80 ASN 6 23 23 17 73.9 1.3 >sigma
1 81 GLY 3 27 31 16 51.6 0.0 .
1 82 VAL 5 40 42 26 61.9 0.6 .
1 83 ILE 6 37 63 24 38.1 -0.8 .
1 84 SER 4 19 25 7 28.0 -1.4 >sigma
1 85 THR 4 31 37 21 56.8 0.3 .
1 86 PHE 7 29 52 14 26.9 -1.4 >sigma
1 87 HIS 6 11 12 8 66.7 0.9 .
1 88 GLY 3 12 9 5 55.6 0.3 .
1 89 ARG 7 17 25 11 44.0 -0.4 .
1 90 PRO 5 17 40 11 27.5 -1.4 >sigma
1 91 GLU 5 22 22 14 63.6 0.7 .
1 92 PRO 5 15 12 9 75.0 1.4 >sigma
1 93 ALA 3 15 13 11 84.6 2.0 >sigma
1 94 SER 4 21 21 15 71.4 1.2 >sigma
1 95 GLU 5 9 11 7 63.6 0.7 .
1 96 PRO 5 11 21 7 33.3 -1.1 >sigma
1 97 ILE 6 37 39 21 53.8 0.2 .
1 98 GLN 7 35 42 20 47.6 -0.2 .
1 99 SER 4 17 13 7 53.8 0.2 .
1 100 PHE 7 28 35 15 42.9 -0.5 .
1 101 PHE 7 15 27 11 40.7 -0.6 .
1 102 GLN 7 19 27 14 51.9 0.0 .
1 103 ILE 6 41 71 29 40.8 -0.6 .
1 104 ASP 4 32 26 17 65.4 0.8 .
1 105 LEU 7 58 73 40 54.8 0.2 .
1 106 GLU 5 24 18 13 72.2 1.2 >sigma
1 107 ARG 7 35 40 21 52.5 0.1 .
1 108 LEU 7 79 72 45 62.5 0.7 .
1 109 GLU 5 19 17 12 70.6 1.1 >sigma
1 110 SER 4 5 12 4 33.3 -1.1 >sigma
1 111 HIS 6 7 14 6 42.9 -0.5 .
1 112 MET 6 31 37 20 54.1 0.2 .
1 113 GLN 7 66 62 43 69.4 1.1 >sigma
1 114 LYS 7 26 28 20 71.4 1.2 >sigma
1 115 ASN 6 26 24 18 75.0 1.4 >sigma
1 116 LEU 7 45 70 31 44.3 -0.4 .
1 117 LEU 7 27 38 16 42.1 -0.5 .
1 118 LYS 7 24 23 14 60.9 0.6 .
1 119 GLY 3 17 29 10 34.5 -1.0 .
1 120 ILE 6 29 48 16 33.3 -1.1 >sigma
1 121 PRO 5 11 13 8 61.5 0.6 .
1 122 PHE 7 14 13 6 46.2 -0.3 .
1 123 ARG 7 5 23 2 8.7 -2.5 >sigma
1 124 THR 4 18 25 12 48.0 -0.2 .
1 125 LYS 7 27 47 21 44.7 -0.4 .
1 126 ALA 3 28 26 17 65.4 0.8 .
1 127 GLU 5 20 26 14 53.8 0.2 .
1 128 PHE 7 42 64 28 43.8 -0.4 .
1 129 GLU 5 37 28 19 67.9 1.0 .
1 130 ASP 4 25 19 14 73.7 1.3 >sigma
1 131 VAL 5 41 39 22 56.4 0.3 .
1 132 ILE 6 58 57 37 64.9 0.8 .
1 133 GLU 5 36 22 16 72.7 1.3 >sigma
1 134 HIS 6 33 27 19 70.4 1.1 >sigma
1 135 MET 6 43 57 24 42.1 -0.5 .
1 136 LYS 7 31 34 18 52.9 0.1 .
1 137 THR 4 25 17 12 70.6 1.1 >sigma
1 138 TYR 6 50 52 30 57.7 0.4 .
1 139 SER 4 13 23 9 39.1 -0.7 .
1 140 GLY 3 13 14 6 42.9 -0.5 .
stop_
save_