Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
405265 | 1x5d RC | 11116 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1x5d
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 133
_NOE_completeness_stats.Total_atom_count 1972
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 691
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 66.2
_NOE_completeness_stats.Constraint_unexpanded_count 2877
_NOE_completeness_stats.Constraint_count 2877
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2043
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 22
_NOE_completeness_stats.Constraint_intraresidue_count 566
_NOE_completeness_stats.Constraint_surplus_count 198
_NOE_completeness_stats.Constraint_observed_count 2091
_NOE_completeness_stats.Constraint_expected_count 1873
_NOE_completeness_stats.Constraint_matched_count 1240
_NOE_completeness_stats.Constraint_unmatched_count 851
_NOE_completeness_stats.Constraint_exp_nonobs_count 633
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 606 587 363 61.8 -0.8 .
medium-range 566 420 305 72.6 0.9 .
long-range 919 866 572 66.1 -0.1 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 27 23 0 2 14 6 1 0 0 0 . 0 85.2 85.2
shell 2.00 2.50 257 235 0 42 96 69 19 9 0 0 . 0 91.4 90.8
shell 2.50 3.00 345 262 0 4 85 104 47 20 2 0 . 0 75.9 82.7
shell 3.00 3.50 485 332 0 0 22 123 126 55 5 1 . 0 68.5 76.5
shell 3.50 4.00 759 388 0 0 1 60 205 105 15 2 . 0 51.1 66.2
shell 4.00 4.50 1212 433 0 0 0 4 124 231 59 15 . 0 35.7 54.2
shell 4.50 5.00 1622 278 0 0 0 0 2 123 130 23 . 0 17.1 41.4
shell 5.00 5.50 1999 133 0 0 0 0 0 7 62 64 . 0 6.7 31.1
shell 5.50 6.00 2208 7 0 0 0 0 0 0 4 3 . 0 0.3 23.5
shell 6.00 6.50 2559 0 0 0 0 0 0 0 0 0 . 0 0.0 18.2
shell 6.50 7.00 2845 0 0 0 0 0 0 0 0 0 . 0 0.0 14.6
shell 7.00 7.50 2921 0 0 0 0 0 0 0 0 0 . 0 0.0 12.1
shell 7.50 8.00 3256 0 0 0 0 0 0 0 0 0 . 0 0.0 10.2
shell 8.00 8.50 3566 0 0 0 0 0 0 0 0 0 . 0 0.0 8.7
shell 8.50 9.00 3780 0 0 0 0 0 0 0 0 0 . 0 0.0 7.5
sums . . 27841 2091 0 48 218 366 524 550 277 108 . 0 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 0 2 0 0.0 -2.5 >sigma
1 2 SER 4 0 4 0 0.0 -2.5 >sigma
1 3 SER 4 0 6 0 0.0 -2.5 >sigma
1 4 GLY 3 0 7 0 0.0 -2.5 >sigma
1 5 SER 4 0 7 0 0.0 -2.5 >sigma
1 6 SER 4 3 12 3 25.0 -1.4 >sigma
1 7 GLY 3 6 9 4 44.4 -0.6 .
1 8 ASP 4 12 15 9 60.0 0.1 .
1 9 VAL 5 42 32 23 71.9 0.6 .
1 10 ILE 6 48 36 28 77.8 0.8 .
1 11 GLU 5 16 9 6 66.7 0.3 .
1 12 LEU 7 68 55 40 72.7 0.6 .
1 13 THR 4 23 22 15 68.2 0.4 .
1 14 ASP 4 29 24 15 62.5 0.2 .
1 15 ASP 4 3 11 2 18.2 -1.7 >sigma
1 16 SER 4 25 32 18 56.3 -0.1 .
1 17 PHE 7 67 62 44 71.0 0.5 .
1 18 ASP 4 21 29 14 48.3 -0.4 .
1 19 LYS 7 18 22 14 63.6 0.2 .
1 20 ASN 6 36 34 21 61.8 0.1 .
1 21 VAL 5 65 47 39 83.0 1.0 >sigma
1 22 LEU 7 36 34 19 55.9 -0.1 .
1 23 ASP 4 15 12 9 75.0 0.7 .
1 24 SER 4 27 16 13 81.3 1.0 .
1 25 GLU 5 12 11 6 54.5 -0.2 .
1 26 ASP 4 27 23 17 73.9 0.6 .
1 27 VAL 5 56 56 37 66.1 0.3 .
1 28 TRP 10 91 63 56 88.9 1.3 >sigma
1 29 MET 6 85 62 50 80.6 0.9 .
1 30 VAL 5 73 50 45 90.0 1.3 >sigma
1 31 GLU 5 43 36 26 72.2 0.6 .
1 32 PHE 7 72 65 42 64.6 0.3 .
1 33 TYR 6 57 35 27 77.1 0.8 .
1 34 ALA 3 43 35 29 82.9 1.0 >sigma
1 35 PRO 5 20 24 15 62.5 0.2 .
1 36 TRP 10 35 32 25 78.1 0.8 .
1 37 CYS 4 19 18 11 61.1 0.1 .
1 38 GLY 3 9 9 4 44.4 -0.6 .
1 39 HIS 6 9 13 7 53.8 -0.2 .
1 40 CYS 4 28 28 19 67.9 0.4 .
1 41 LYS 7 28 17 13 76.5 0.8 .
1 42 ASN 6 20 15 11 73.3 0.6 .
1 43 LEU 7 60 63 41 65.1 0.3 .
1 44 GLU 5 23 21 12 57.1 -0.1 .
1 45 PRO 5 18 21 15 71.4 0.5 .
1 46 GLU 5 42 33 24 72.7 0.6 .
1 47 TRP 10 102 80 60 75.0 0.7 .
1 48 ALA 3 30 22 16 72.7 0.6 .
1 49 ALA 3 28 19 14 73.7 0.6 .
1 50 ALA 3 58 42 34 81.0 0.9 .
1 51 ALA 3 46 31 23 74.2 0.7 .
1 52 SER 4 25 20 16 80.0 0.9 .
1 53 GLU 5 41 31 24 77.4 0.8 .
1 54 VAL 5 78 59 43 72.9 0.6 .
1 55 LYS 7 34 31 21 67.7 0.4 .
1 56 GLU 5 25 20 14 70.0 0.5 .
1 57 GLN 7 49 44 31 70.5 0.5 .
1 58 THR 4 60 50 37 74.0 0.6 .
1 59 LYS 7 11 14 3 21.4 -1.6 >sigma
1 60 GLY 3 13 13 6 46.2 -0.5 .
1 61 LYS 7 40 64 26 40.6 -0.8 .
1 62 VAL 5 61 57 38 66.7 0.3 .
1 63 LYS 7 40 27 23 85.2 1.1 >sigma
1 64 LEU 7 82 62 52 83.9 1.1 >sigma
1 65 ALA 3 54 39 32 82.1 1.0 .
1 66 ALA 3 45 26 23 88.5 1.3 >sigma
1 67 VAL 5 63 48 42 87.5 1.2 >sigma
1 68 ASP 4 33 24 15 62.5 0.2 .
1 69 ALA 3 40 29 23 79.3 0.9 .
1 70 THR 4 33 26 21 80.8 0.9 .
1 71 VAL 5 31 21 16 76.2 0.7 .
1 72 ASN 6 54 40 31 77.5 0.8 .
1 73 GLN 7 31 16 12 75.0 0.7 .
1 74 VAL 5 37 27 21 77.8 0.8 .
1 75 LEU 7 62 59 38 64.4 0.2 .
1 76 ALA 3 42 31 18 58.1 -0.0 .
1 77 SER 4 24 14 8 57.1 -0.1 .
1 78 ARG 7 27 25 16 64.0 0.2 .
1 79 TYR 6 47 40 28 70.0 0.5 .
1 80 GLY 3 13 12 8 66.7 0.3 .
1 81 ILE 6 56 54 39 72.2 0.6 .
1 82 ARG 7 9 11 5 45.5 -0.6 .
1 83 GLY 3 9 10 5 50.0 -0.4 .
1 84 PHE 7 37 41 24 58.5 -0.0 .
1 85 PRO 5 22 34 18 52.9 -0.2 .
1 86 THR 4 40 32 26 81.3 1.0 .
1 87 ILE 6 57 58 32 55.2 -0.1 .
1 88 LYS 7 60 49 30 61.2 0.1 .
1 89 ILE 6 65 55 37 67.3 0.4 .
1 90 PHE 7 67 56 39 69.6 0.5 .
1 91 GLN 7 33 34 16 47.1 -0.5 .
1 92 LYS 7 24 19 10 52.6 -0.3 .
1 93 GLY 3 9 9 5 55.6 -0.1 .
1 94 GLU 5 8 15 5 33.3 -1.1 >sigma
1 95 SER 4 3 8 2 25.0 -1.4 >sigma
1 96 PRO 5 18 22 11 50.0 -0.4 .
1 97 VAL 5 28 21 16 76.2 0.7 .
1 98 ASP 4 15 17 9 52.9 -0.2 .
1 99 TYR 6 58 50 39 78.0 0.8 .
1 100 ASP 4 0 6 0 0.0 -2.5 >sigma
1 101 GLY 3 6 9 6 66.7 0.3 .
1 102 GLY 3 11 11 8 72.7 0.6 .
1 103 ARG 7 19 26 14 53.8 -0.2 .
1 104 THR 4 32 24 17 70.8 0.5 .
1 105 ARG 7 50 45 37 82.2 1.0 .
1 106 SER 4 20 16 11 68.8 0.4 .
1 107 ASP 4 29 19 14 73.7 0.6 .
1 108 ILE 6 70 63 42 66.7 0.3 .
1 109 VAL 5 62 56 38 67.9 0.4 .
1 110 SER 4 25 17 12 70.6 0.5 .
1 111 ARG 7 39 40 21 52.5 -0.3 .
1 112 ALA 3 48 39 30 76.9 0.8 .
1 113 LEU 7 55 46 35 76.1 0.7 .
1 114 ASP 4 22 15 10 66.7 0.3 .
1 115 LEU 7 50 54 25 46.3 -0.5 .
1 116 PHE 7 52 61 34 55.7 -0.1 .
1 117 SER 4 11 12 6 50.0 -0.4 .
1 118 ASP 4 8 12 7 58.3 -0.0 .
1 119 ASN 6 14 24 10 41.7 -0.7 .
1 120 ALA 3 12 30 6 20.0 -1.6 >sigma
1 121 PRO 5 6 10 4 40.0 -0.8 .
1 122 PRO 5 6 9 5 55.6 -0.1 .
1 123 PRO 5 8 8 5 62.5 0.2 .
1 124 GLU 5 8 5 4 80.0 0.9 .
1 125 LEU 7 6 7 4 57.1 -0.1 .
1 126 LEU 7 4 7 4 57.1 -0.1 .
1 127 GLU 5 2 7 2 28.6 -1.3 >sigma
1 128 SER 4 0 8 0 0.0 -2.5 >sigma
1 129 GLY 3 0 6 0 0.0 -2.5 >sigma
1 130 PRO 5 0 7 0 0.0 -2.5 >sigma
1 131 SER 4 0 8 0 0.0 -2.5 >sigma
1 132 SER 4 0 8 0 0.0 -2.5 >sigma
1 133 GLY 3 0 4 0 0.0 -2.5 >sigma
stop_
save_