Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | in_recoord | stage | program | type | subtype | subsubtype |
|
|
385092 | 1ktm RC | 5266 | cing | recoord | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1ktm
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 25
_NOE_completeness_stats.Residue_count 139
_NOE_completeness_stats.Total_atom_count 2214
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 773
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 45.4
_NOE_completeness_stats.Constraint_unexpanded_count 2557
_NOE_completeness_stats.Constraint_count 2557
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2306
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 72
_NOE_completeness_stats.Constraint_intraresidue_count 491
_NOE_completeness_stats.Constraint_surplus_count 346
_NOE_completeness_stats.Constraint_observed_count 1648
_NOE_completeness_stats.Constraint_expected_count 2054
_NOE_completeness_stats.Constraint_matched_count 933
_NOE_completeness_stats.Constraint_unmatched_count 715
_NOE_completeness_stats.Constraint_exp_nonobs_count 1121
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 522 759 374 49.3 0.4 .
medium-range 741 693 367 53.0 0.6 .
long-range 385 602 192 31.9 -1.0 >sigma
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 18 14 0 0 1 1 0 3 0 1 . 8 77.8 77.8
shell 2.00 2.50 163 108 0 2 12 19 12 5 5 8 . 45 66.3 67.4
shell 2.50 3.00 401 264 0 2 67 55 28 18 10 10 . 74 65.8 66.3
shell 3.00 3.50 537 257 0 0 13 41 51 22 12 15 . 103 47.9 57.5
shell 3.50 4.00 935 290 0 0 2 28 38 28 20 13 . 161 31.0 45.4
shell 4.00 4.50 1342 248 0 0 0 0 9 13 23 23 . 180 18.5 34.8
shell 4.50 5.00 1992 183 0 0 0 0 0 7 7 16 . 153 9.2 25.3
shell 5.00 5.50 2454 135 0 0 0 0 0 0 7 4 . 124 5.5 19.1
shell 5.50 6.00 2756 89 0 0 0 0 0 0 0 8 . 81 3.2 15.0
shell 6.00 6.50 3102 41 0 0 0 0 0 0 0 0 . 41 1.3 11.9
shell 6.50 7.00 3272 11 0 0 0 0 0 0 0 0 . 11 0.3 9.7
shell 7.00 7.50 3462 5 0 0 0 0 0 0 0 0 . 5 0.1 8.1
shell 7.50 8.00 3912 2 0 0 0 0 0 0 0 0 . 2 0.1 6.8
shell 8.00 8.50 4145 1 0 0 0 0 0 0 0 0 . 1 0.0 5.8
shell 8.50 9.00 4240 0 0 0 0 0 0 0 0 0 . 0 0.0 5.0
sums . . 32731 1648 0 4 95 144 138 96 84 98 . 989 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 0 4 0 0.0 -2.6 >sigma
1 2 ALA 3 5 7 2 28.6 -1.0 .
1 3 ASN 6 1 3 1 33.3 -0.7 .
1 4 LEU 7 10 4 3 75.0 1.7 >sigma
1 5 ASP 4 5 6 2 33.3 -0.7 .
1 6 ARG 7 0 8 0 0.0 -2.6 >sigma
1 7 SER 4 3 15 2 13.3 -1.8 >sigma
1 8 ASN 6 7 21 5 23.8 -1.2 >sigma
1 9 ASP 4 8 14 7 50.0 0.2 .
1 10 LYS 7 23 24 14 58.3 0.7 .
1 11 VAL 5 33 55 20 36.4 -0.5 .
1 12 TYR 6 31 37 12 32.4 -0.8 .
1 13 GLU 5 19 20 10 50.0 0.2 .
1 14 ASN 6 35 28 14 50.0 0.2 .
1 15 VAL 5 35 54 23 42.6 -0.2 .
1 16 THR 4 26 26 13 50.0 0.2 .
1 17 GLY 3 9 14 5 35.7 -0.6 .
1 18 LEU 7 24 54 16 29.6 -0.9 .
1 19 VAL 5 34 48 26 54.2 0.5 .
1 20 LYS 7 37 26 14 53.8 0.5 .
1 21 ALA 3 29 19 14 73.7 1.6 >sigma
1 22 VAL 5 35 53 22 41.5 -0.2 .
1 23 ILE 6 28 27 13 48.1 0.1 .
1 24 GLU 5 22 21 14 66.7 1.2 >sigma
1 25 MET 6 37 50 22 44.0 -0.1 .
1 26 SER 4 15 28 12 42.9 -0.2 .
1 27 SER 4 13 18 8 44.4 -0.1 .
1 28 LYS 7 22 37 11 29.7 -0.9 .
1 29 ILE 6 64 66 35 53.0 0.4 .
1 30 GLN 7 15 31 11 35.5 -0.6 .
1 31 PRO 5 10 20 8 40.0 -0.3 .
1 32 ALA 3 30 27 14 51.9 0.4 .
1 33 PRO 5 9 23 3 13.0 -1.9 >sigma
1 34 PRO 5 15 28 9 32.1 -0.8 .
1 35 GLU 5 14 20 8 40.0 -0.3 .
1 36 GLU 5 21 29 9 31.0 -0.8 .
1 37 TYR 6 46 52 26 50.0 0.2 .
1 38 VAL 5 37 35 20 57.1 0.7 .
1 39 PRO 5 14 28 10 35.7 -0.6 .
1 40 MET 6 45 41 21 51.2 0.3 .
1 41 VAL 5 44 53 24 45.3 -0.0 .
1 42 LYS 7 37 24 17 70.8 1.4 >sigma
1 43 GLU 5 27 17 12 70.6 1.4 >sigma
1 44 VAL 5 31 39 18 46.2 0.0 .
1 45 GLY 3 20 23 9 39.1 -0.4 .
1 46 LEU 7 24 20 9 45.0 -0.0 .
1 47 ALA 3 34 20 14 70.0 1.4 >sigma
1 48 LEU 7 19 56 8 14.3 -1.8 >sigma
1 49 ARG 7 22 20 11 55.0 0.5 .
1 50 THR 4 31 23 16 69.6 1.4 >sigma
1 51 LEU 7 15 51 9 17.6 -1.6 >sigma
1 52 LEU 7 52 30 19 63.3 1.0 >sigma
1 53 ALA 3 25 15 13 86.7 2.3 >sigma
1 54 THR 4 26 35 18 51.4 0.3 .
1 55 VAL 5 56 51 32 62.7 1.0 .
1 56 ASP 4 38 21 15 71.4 1.5 >sigma
1 57 GLU 5 19 20 9 45.0 -0.0 .
1 58 SER 4 30 34 20 58.8 0.7 .
1 59 LEU 7 60 32 23 71.9 1.5 >sigma
1 60 PRO 5 16 21 10 47.6 0.1 .
1 61 VAL 5 32 38 14 36.8 -0.5 .
1 62 LEU 7 38 63 18 28.6 -1.0 .
1 63 PRO 5 12 36 8 22.2 -1.3 >sigma
1 64 ALA 3 7 11 4 36.4 -0.5 .
1 65 SER 4 0 15 0 0.0 -2.6 >sigma
1 66 THR 4 23 41 13 31.7 -0.8 .
1 67 HIS 6 27 22 16 72.7 1.5 >sigma
1 68 ARG 7 11 16 10 62.5 1.0 .
1 69 GLU 5 21 22 12 54.5 0.5 .
1 70 ILE 6 58 61 32 52.5 0.4 .
1 71 GLU 5 21 20 14 70.0 1.4 >sigma
1 72 MET 6 24 19 12 63.2 1.0 .
1 73 ALA 3 26 29 15 51.7 0.3 .
1 74 GLN 7 37 36 21 58.3 0.7 .
1 75 LYS 7 21 16 12 75.0 1.7 >sigma
1 76 LEU 7 24 29 16 55.2 0.5 .
1 77 LEU 7 27 61 17 27.9 -1.0 >sigma
1 78 ASN 6 21 23 15 65.2 1.1 >sigma
1 79 SER 4 10 19 8 42.1 -0.2 .
1 80 ASP 4 28 27 16 59.3 0.8 .
1 81 LEU 7 37 60 22 36.7 -0.5 .
1 82 ALA 3 23 21 14 66.7 1.2 >sigma
1 83 GLU 5 21 22 13 59.1 0.8 .
1 84 LEU 7 31 51 17 33.3 -0.7 .
1 85 ILE 6 40 41 20 48.8 0.2 .
1 86 ASN 6 21 21 14 66.7 1.2 >sigma
1 87 LYS 7 16 38 12 31.6 -0.8 .
1 88 MET 6 41 44 21 47.7 0.1 .
1 89 LYS 7 23 27 18 66.7 1.2 >sigma
1 90 LEU 7 32 43 22 51.2 0.3 .
1 91 ALA 3 33 30 18 60.0 0.8 .
1 92 GLN 7 27 34 13 38.2 -0.4 .
1 93 GLN 7 14 22 8 36.4 -0.5 .
1 94 TYR 6 33 46 22 47.8 0.1 .
1 95 VAL 5 37 39 19 48.7 0.2 .
1 96 MET 6 19 24 9 37.5 -0.5 .
1 97 THR 4 10 21 6 28.6 -1.0 .
1 98 SER 4 2 10 1 10.0 -2.0 >sigma
1 99 LEU 7 32 34 16 47.1 0.1 .
1 100 GLN 7 16 34 11 32.4 -0.8 .
1 101 GLN 7 12 22 8 36.4 -0.5 .
1 102 GLU 5 26 25 16 64.0 1.0 >sigma
1 103 TYR 6 35 40 24 60.0 0.8 .
1 104 LYS 7 32 50 22 44.0 -0.1 .
1 105 LYS 7 21 24 11 45.8 0.0 .
1 106 GLN 7 17 28 10 35.7 -0.6 .
1 107 MET 6 30 37 20 54.1 0.5 .
1 108 LEU 7 24 28 14 50.0 0.2 .
1 109 THR 4 20 16 12 75.0 1.7 >sigma
1 110 ALA 3 27 29 20 69.0 1.3 >sigma
1 111 ALA 3 32 32 17 53.1 0.4 .
1 112 HIS 6 22 19 11 57.9 0.7 .
1 113 ALA 3 16 19 13 68.4 1.3 >sigma
1 114 LEU 7 47 57 23 40.4 -0.3 .
1 115 ALA 3 31 29 16 55.2 0.5 .
1 116 VAL 5 31 24 16 66.7 1.2 >sigma
1 117 ASP 4 20 27 12 44.4 -0.1 .
1 118 ALA 3 22 32 17 53.1 0.4 .
1 119 LYS 7 21 24 13 54.2 0.5 .
1 120 ASN 6 22 22 12 54.5 0.5 .
1 121 LEU 7 9 58 8 13.8 -1.8 >sigma
1 122 LEU 7 33 52 20 38.5 -0.4 .
1 123 ASP 4 20 21 12 57.1 0.7 .
1 124 VAL 5 33 39 20 51.3 0.3 .
1 125 ILE 6 49 73 31 42.5 -0.2 .
1 126 ASP 4 17 19 11 57.9 0.7 .
1 127 GLN 7 17 20 10 50.0 0.2 .
1 128 ALA 3 30 39 18 46.2 0.0 .
1 129 ARG 7 15 36 14 38.9 -0.4 .
1 130 LEU 7 23 30 14 46.7 0.1 .
1 131 LYS 7 19 31 10 32.3 -0.8 .
1 132 MET 6 24 35 14 40.0 -0.3 .
1 133 ILE 6 16 28 11 39.3 -0.4 .
1 134 SER 4 5 9 3 33.3 -0.7 .
1 135 GLN 7 1 8 1 12.5 -1.9 >sigma
1 136 SER 4 0 7 0 0.0 -2.6 >sigma
1 137 ARG 7 5 10 4 40.0 -0.3 .
1 138 PRO 5 4 12 4 33.3 -0.7 .
1 139 HIS 6 0 5 0 0.0 -2.6 >sigma
stop_
save_