Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | position | program | type | subtype | subsubtype |
|
|
16821 | 2au4 RC | 6814 | cing | 1-original | 2 | XPLOR/CNS | distance | hydrogen bond | simple |
!!August 2005 Class I GTP aptamer hbond base-pair restraints
!gua 1- cyt 41
assign (resid 1 and name n1) (resid 41 and name n3) 2.95 0.01 0.01
assign (resid 1 and name o6) (resid 41 and name n4) 2.91 0.01 0.01
assign (resid 1 and name n2) (resid 41 and name o2) 2.86 0.01 0.01
assign (resid 1 and name n2) (resid 41 and name n3) 3.65 0.01 0.01
assign (resid 1 and name o6) (resid 41 and name o2) 5.42 0.01 0.01
!gua2 - cyt 40
assign (resid 2 and name n1) (resid 40 and name n3) 2.95 0.01 0.01
assign (resid 2 and name o6) (resid 40 and name n4) 2.91 0.01 0.01
assign (resid 2 and name n2) (resid 40 and name o2) 2.86 0.01 0.01
assign (resid 2 and name n2) (resid 40 and name n3) 3.65 0.01 0.01
assign (resid 2 and name o6) (resid 40 and name o2) 5.42 0.01 0.01
! Gua 3 - Cyt 39
assign (resid 3 and name n1) (resid 39 and name n3) 2.95 0.01 0.01
assign (resid 3 and name o6) (resid 39 and name n4) 2.91 0.01 0.01
assign (resid 3 and name n2) (resid 39 and name o2) 2.86 0.01 0.01
assign (resid 3 and name n2) (resid 39 and name n3) 3.65 0.01 0.01
assign (resid 3 and name o6) (resid 39 and name o2) 5.42 0.01 0.01
! Ade 4 - Uri 38
assign (resid 38 and name o4) (resid 4 and name n6) 2.95 0.01 0.01
assign (resid 38 and name n3) (resid 4 and name n1) 2.82 0.01 0.01
assign (resid 38 and name o4) (resid 4 and name n1) 4.05 0.01 0.01
assign (resid 38 and name o2) (resid 4 and name n6) 4.79 0.01 0.01
! Cyt 5 - Gua 37
assign (resid 5 and name n4) (resid 37 and name o6) 2.91 0.01 0.01
assign (resid 5 and name n3) (resid 37 and name n1) 2.95 0.01 0.01
assign (resid 5 and name o2) (resid 37 and name n2) 2.86 0.01 0.01
assign (resid 5 and name n3) (resid 37 and name n2) 3.65 0.01 0.01
assign (resid 5 and name o2) (resid 37 and name o6) 5.42 0.01 0.01
! Gua 6 - Cyt 36
assign (resid 6 and name n1) (resid 36 and name n3) 2.95 0.01 0.01
assign (resid 6 and name o6) (resid 36 and name n4) 2.91 0.01 0.01
assign (resid 6 and name n2) (resid 36 and name o2) 2.86 0.01 0.01
assign (resid 6 and name n2) (resid 36 and name n3) 3.65 0.01 0.01
assign (resid 6 and name o6) (resid 36 and name o2) 5.42 0.01 0.01
! cyt 18 - gua 27
! to allow for possibility that it is splayed like g17-u28
! did not apply hbond restraints here
! Gua 19 - Cyt 26
assign (resid 19 and name n1) (resid 26 and name n3) 2.95 0.01 0.01
assign (resid 19 and name o6) (resid 26 and name n4) 2.91 0.01 0.01
assign (resid 19 and name n2) (resid 26 and name o2) 2.86 0.01 0.01
assign (resid 19 and name n2) (resid 26 and name n3) 3.65 0.01 0.01
assign (resid 19 and name o6) (resid 26 and name o2) 5.42 0.01 0.01
! cyt 20 - gua 25
assign (resid 25 and name n1) (resid 20 and name n3) 2.95 0.01 0.01
assign (resid 25 and name o6) (resid 20 and name n4) 2.91 0.01 0.01
assign (resid 25 and name n2) (resid 20 and name o2) 2.86 0.01 0.01
assign (resid 25 and name n2) (resid 20 and name n3) 3.65 0.01 0.01
assign (resid 25 and name o6) (resid 20 and name o2) 5.42 0.01 0.01
!!August 2005 tetraloop distance restraints for the Class I GTP aptamer
!!obtained from 1F7Y Ennifar et al. 2002 crystal structure
!resid 21
assign (resid 21 and name c2') (resid 22 and name c6) 5.2 0.3 0.3
assign (resid 21 and name o2') (resid 22 and name c2') 3.7 0.3 0.3
assign (resid 21 and name c3') (resid 22 and name c6) 5.0 0.3 0.3
assign (resid 21 and name c3') (resid 22 and name c2') 5.2 0.3 0.3
!resid 22
assign (resid 22 and name c2') (resid 22 and name c6) 3.2 0.3 0.3
assign (resid 22 and name c3') (resid 22 and name c6) 4.3 0.3 0.3
!resid 23
assign (resid 23 and name c6) (resid 23 and name c3') 4.5 0.3 0.3
assign (resid 23 and name c6) (resid 23 and name c2') 3.4 0.3 0.3
assign (resid 23 and name c1') (resid 21 and name o2') 6.2 0.6 0.6
assign (resid 23 and name c6) (resid 24 and name n1) 3.5 0.3 0.3
assign (resid 23 and name c1') (resid 24 and name n1) 3.6 0.3 0.3
assign (resid 23 and name c4') (resid 24 and name n1) 4.0 0.3 0.3
assign (resid 23 and name c6) (resid 24 and name o6) 3.8 0.3 0.3
assign (resid 23 and name o2) (resid 24 and name n1) 5.2 0.3 0.3
assign (resid 23 and name o2) (resid 24 and name n2) 4.3 0.3 0.3
assign (resid 23 and name c6) (resid 21 and name c2') 4.0 0.3 0.3
!resid 24
assign (resid 24 and name n1) (resid 21 and name o2) 2.9 0.3 0.3
assign (resid 24 and name o6) (resid 21 and name o2) 3.9 0.3 0.3
assign (resid 24 and name n1) (resid 21 and name n3) 4.9 0.3 0.3
assign (resid 24 and name n2) (resid 21 and name n3) 4.6 0.3 0.3
assign (resid 24 and name n2) (resid 21 and name o2) 3.3 0.3 0.3
assign (resid 24 and name n2) (resid 21 and name n1) 5.5 0.3 0.3
assign (resid 24 and name n1) (resid 21 and name o2') 4.1 0.3 0.3
assign (resid 24 and name o6) (resid 21 and name o2') 2.4 0.3 0.3