segName='   A'
seq="""
GLY THR THR CYS TYR CYS GLY LYS THR ILE 
GLY ILE TYR TRP PHE GLY THR LYS THR CYS 
PRO SER ASN ARG GLY TYR THR GLY SER CYS 
GLY TYR PHE LEU GLY ILE CYS CYS TYR PRO 
VAL ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
