segName='   A'
seq="""
GLY SER PRO GLY GLU ASN LEU LYS HIS ILE 
ILE THR LEU GLY GLN VAL ILE HIS LYS ARG 
CYS GLU GLU MET LYS TYR CYS LYS LYS GLN 
CYS ARG ARG LEU GLY HIS ARG VAL LEU GLY 
LEU ILE LYS PRO LEU GLU MET LEU GLN ASP 
GLN GLY LYS ARG SER VAL PRO SER GLU LYS 
LEU THR THR ALA MET ASN ARG PHE LYS ALA 
ALA LEU GLU GLU ALA ASN GLY GLU ILE GLU 
LYS PHE SER ASN ARG SER ASN ILE CYS ARG 
PHE LEU THR ALA SER GLN ASP LYS ILE LEU 
PHE LYS ASP VAL ASN ARG LYS LEU SER ASP 
VAL TRP LYS GLU LEU SER LEU LEU LEU GLN 
VAL GLU GLN ARG MET PRO VAL SER PRO ILE 
SER GLN GLY ALA SER TRP ALA GLN GLU ASP 
GLN GLN ASP ALA ASP GLU ASP ARG ARG ALA 
PHE GLN MET LEU ARG ARG ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
