segName='   B'
seq="""
GLY PRO GLY SER MET CYS MET ALA LYS VAL 
VAL LEU THR LYS ALA ASP GLY GLY ARG VAL 
GLU ILE GLY ASP VAL LEU GLU VAL ARG ALA 
GLU GLY GLY ALA VAL ARG VAL THR THR LEU 
PHE ASP GLU GLU HIS ALA PHE PRO GLY LEU 
ALA ILE GLY ARG VAL ASP LEU ARG SER GLY 
VAL ILE SER LEU ILE GLU GLU GLN ASN ARG 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
