segName='   A'
seq="""
GLY SER HIS MET ASP ASN SER ALA SER LYS 
ASN SER ALA ILE SER SER SER ILE PHE CYS 
GLU LYS TYR LYS GLN THR LYS GLU GLN ALA 
LEU THR PHE PHE GLN GLU HIS PRO GLN TYR 
MET ARG SER LYS GLU ASP GLU GLU GLN LEU 
MET THR GLU PHE LYS LYS VAL LEU LEU GLU 
PRO GLY SER LYS ASN LEU SER ILE TYR GLN 
THR LEU LEU ALA ALA HIS GLU ARG LEU GLN 
ALA LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
