segName='   A'
seq="""
MET LYS PRO HIS PRO TRP PHE PHE GLY LYS 
ILE PRO ARG ALA LYS ALA GLU GLU MET LEU 
SER LYS GLN ARG HIS ASP GLY ALA PHE LEU 
ILE ARG GLU SER GLU SER ALA PRO GLY ASP 
PHE SER LEU SER VAL LYS PHE GLY ASN ASP 
VAL GLN HIS PHE LYS VAL LEU ARG ASP GLY 
ALA GLY LYS TYR PHE LEU TRP VAL VAL LYS 
PHE ASN SER LEU ASN GLU LEU VAL ASP TYR 
HIS ARG SER THR SER VAL SER ARG ASN GLN 
GLN ILE PHE LEU ARG ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
