segName='   A'
seq="""
MET THR GLU TYR LYS LEU VAL VAL VAL GLY 
ALA GLY GLY VAL GLY LYS SER ALA LEU THR 
ILE GLN LEU ILE GLN ASN HIS PHE VAL ASP 
GLU TYR ASP PRO THR ILE GLU ASP SER TYR 
ARG LYS GLN VAL VAL ILE ASP GLY GLU THR 
CYS LEU LEU ASP ILE LEU ASP THR ALA GLY 
GLN GLU GLU TYR SER ALA MET ARG ASP GLN 
TYR MET ARG THR GLY GLU GLY PHE LEU CYS 
VAL PHE ALA ILE ASN ASN THR LYS SER PHE 
GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE 
LYS ARG VAL LYS ASP SER GLU ASP VAL PRO 
MET VAL LEU VAL GLY ASN LYS CYS ASP LEU 
PRO SER ARG THR VAL ASP THR LYS GLN ALA 
GLN ASP LEU ALA ARG SER TYR GLY ILE PRO 
PHE ILE GLU THR SER ALA LYS THR ARG GLN 
GLY VAL ASP ASP ALA PHE TYR THR LEU VAL 
ARG GLU ILE ARG LYS HIS LYS GLU LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
