segName='   A'
seq="""
ASN LEU THR LYS GLN LYS ASP ALA VAL SER 
ASP THR GLY THR ALA ALA VAL VAL LYS VAL 
VAL GLU SER GLN ALA GLU LEU TYR GLU LEU 
LYS ASN THR ASN GLU LYS ALA SER LEU SER 
LYS LEU VAL SER SER GLY ASN ILE SER GLN 
LYS GLN ALA ASP SER TYR LYS ALA TYR TYR 
GLY LYS HIS SER GLY GLU THR GLN THR VAL 
ALA ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
