segName='   A'
seq="""
GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE 
ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS 
THR SER TYR LEU ASP MET PRO GLY PHE GLY 
ALA VAL ALA SER ASN GLY LEU ILE VAL ARG 
ASP GLY GLY ARG VAL LEU VAL VAL ASP THR 
ALA TRP THR ASP ASP GLN THR ALA GLN ILE 
LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU 
PRO VAL ALA LEU ALA VAL VAL THR HIS ALA 
HIS GLN ASP LYS MET GLY GLY MET ASP ALA 
LEU HIS ALA ALA GLY ILE ALA THR TYR ALA 
ASN ALA LEU SER ASN GLN LEU ALA PRO GLN 
GLU GLY MET VAL ALA ALA GLN HIS SER LEU 
THR PHE ALA ALA ASN GLY TRP VAL GLU PRO 
ALA THR ALA PRO ASN PHE GLY PRO LEU LYS 
VAL PHE TYR PRO GLY PRO GLY HIS THR SER 
ASP ASN ILE THR VAL GLY ILE ASP GLY THR 
ASP ILE ALA PHE GLY GLY CYS LEU ILE LYS 
ASP SER LYS ALA LYS SER LEU GLY ASN LEU 
GLY ASP ALA ASP THR GLU HIS TYR ALA ALA 
SER ALA ARG ALA PHE GLY ALA ALA PHE PRO 
LYS ALA SER MET ILE VAL MET SER HIS SER 
ALA PRO ASP SER ARG ALA ALA ILE THR HIS 
THR ALA ARG MET ALA ASP LYS LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
