segName='   A'
seq="""
ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG 
GLN LEU ALA PRO ASN VAL TRP GLN HIS THR 
SER TYR LEU ASP MET PRO GLY PHE GLY ALA 
VAL ALA SER ASN GLY LEU ILE VAL ARG ASP 
GLY GLY ARG VAL LEU VAL VAL ASP THR ALA 
TRP THR ASP ASP GLN THR ALA GLN ILE LEU 
ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO 
VAL ALA LEU ALA VAL VAL THR HIS ALA HIS 
GLN ASP LYS MET GLY GLY MET ASP ALA LEU 
HIS ALA ALA GLY ILE ALA THR TYR ALA ASN 
ALA LEU SER ASN GLN LEU ALA PRO GLN GLU 
GLY MET VAL ALA ALA GLN HIS SER LEU THR 
PHE ALA ALA ASN GLY TRP VAL GLU PRO ALA 
THR ALA PRO ASN PHE GLY PRO LEU LYS VAL 
PHE TYR PRO GLY PRO GLY HIS THR SER ASP 
ASN ILE THR VAL GLY ILE ASP GLY THR ASP 
ILE ALA PHE GLY GLY CYS LEU ILE LYS ASP 
SER LYS ALA LYS SER LEU GLY ASN LEU GLY 
ASP ALA ASP THR GLU HIS TYR ALA ALA SER 
ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS 
ALA SER MET ILE VAL MET SER HIS SER ALA 
PRO ASP SER ARG ALA ALA ILE THR HIS THR 
ALA ARG MET ALA ASP LYS LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
