segName='   A'
seq="""
MET GLY SER SER HIS HIS HIS HIS HIS HIS 
SER SER GLY LEU VAL PRO ARG GLY SER HIS 
MET THR ASN PHE LYS LEU ILE THR ASP THR 
GLU TRP ARG GLN ARG LEU SER SER GLU GLU 
TYR ARG VAL LEU ARG GLU ALA GLY THR GLU 
ALA PRO HIS THR GLY GLU TYR THR ASN THR 
THR THR GLU GLY ILE TYR SER CYS ARG ALA 
CYS GLY THR GLU LEU PHE ARG SER THR GLU 
LYS PHE ASN SER HIS CYS GLY TRP PRO SER 
PHE PHE SER PRO LEU ALA GLY ASP LYS VAL 
ILE GLU ARG THR ASP THR SER HIS GLY MET 
VAL ARG THR GLU VAL ILE CYS ALA ASN CYS 
GLU SER HIS LEU GLY HIS VAL PHE ALA GLY 
GLU GLY TYR ASP THR PRO THR ASP LEU ARG 
TYR CYS ILE ASN SER VAL CYS LEU THR LEU 
ILE PRO ALA GLU GLU SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
