segName='   A'
seq="""
ALA MET VAL GLY SER GLN MET THR ARG GLN 
ALA ARG ARG LEU TYR VAL GLY ASN ILE PRO 
PHE GLY ILE THR GLU GLU ALA MET MET ASP 
PHE PHE ASN ALA GLN MET ARG LEU GLY GLY 
LEU THR GLN ALA PRO GLY ASN PRO VAL LEU 
ALA VAL GLN ILE ASN GLN ASP LYS ASN PHE 
ALA PHE LEU GLU PHE ARG SER VAL ASP GLU 
THR THR GLN ALA MET ALA PHE ASP GLY ILE 
ILE PHE GLN GLY GLN SER LEU LYS ILE ARG 
ARG PRO HIS ASP TYR GLN PRO LEU PRO GLY 
MET SER GLU ASN PRO SER VAL TYR VAL PRO 
GLY VAL VAL SER THR VAL VAL PRO ASP SER 
ALA HIS LYS LEU PHE ILE GLY GLY LEU PRO 
ASN TYR LEU ASN ASP ASP GLN VAL LYS GLU 
LEU LEU THR SER PHE GLY PRO LEU LYS ALA 
PHE ASN LEU VAL LYS ASP SER ALA THR GLY 
LEU SER LYS GLY TYR ALA PHE CYS GLU TYR 
VAL ASP ILE ASN VAL THR ASP GLN ALA ILE 
ALA GLY LEU ASN GLY MET GLN LEU GLY ASP 
LYS LYS LEU LEU VAL GLN ARG ALA SER VAL 
GLY ALA LYS ASN ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
