segName='   A'
seq="""
GLY SER HIS MET VAL ALA LEU PRO GLN LEU 
THR ASP GLU GLN ARG ALA ALA ALA LEU GLU 
LYS ALA ALA ALA ALA ARG ARG ALA ARG ALA 
GLU LEU LYS ASP ARG LEU LYS ARG GLY GLY 
THR ASN LEU THR GLN VAL LEU LYS ASP ALA 
GLU SER ASP GLU VAL LEU GLY LYS MET LYS 
VAL SER ALA LEU LEU GLU ALA LEU PRO LYS 
VAL GLY LYS VAL LYS ALA GLN GLU ILE MET 
THR GLU LEU GLU ILE ALA PRO THR ARG ARG 
LEU ARG GLY LEU GLY ASP ARG GLN ARG LYS 
ALA LEU LEU GLU LYS PHE GLY SER ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
