segName='   A'
seq="""
MET HIS HIS HIS HIS HIS HIS GLY LYS PRO 
ILE PRO ASN PRO LEU LEU GLY LEU ASP SER 
THR GLU ASN LEU TYR PHE GLN GLY ILE ASP 
PRO PHE THR LEU ASN HIS GLN VAL MET ASP 
GLN VAL PHE ASP GLN VAL GLU HIS GLN ILE 
ALA GLN VAL LEU GLY ALA LYS GLY GLY PRO 
LEU VAL ALA VAL GLU ILE ASP SER ARG PHE 
SER ASP LEU GLY LEU SER SER LEU ASP LEU 
ALA THR LEU ILE SER ASN LEU GLU ALA VAL 
TYR GLY THR ASP PRO PHE ALA ASP ALA VAL 
ALA ILE THR SER ILE VAL THR VAL ALA ASP 
LEU ALA ARG ALA TYR ALA GLN GLN GLY VAL 
PRO GLY PRO SER PRO ASP PRO LEU ASP ALA 
GLN LEU ARG ASP LEU ARG GLN LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
