segName='   A'
seq="""
MET ALA VAL ASN LYS ASN GLU TYR LYS ILE 
LEU ILE MET LEU LYS GLU ASN GLN CYS THR 
THR GLU LEU LYS SER PHE THR TYR THR LYS 
LEU CYS ASN ILE SER LYS LEU SER MET SER 
THR VAL ARG ARG SER ILE LYS LYS PHE LEU 
GLU LEU GLN TYR VAL LYS GLU GLY CYS LYS 
GLN GLY ILE SER LYS THR PHE TYR ILE THR 
PRO ASN GLY ILE GLU LYS LEU LYS SER ILE 
MET
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
