segName='   A'
seq="""
GLY SER ASP ALA LEU ALA LEU ASP LEU ASP 
GLY ASP GLY ILE GLU THR VAL ALA THR LYS 
GLY PHE SER GLY SER LEU PHE ASP HIS ASN 
ARG ASP GLY ILE ARG THR ALA THR GLY TRP 
VAL SER ALA ASP ASP GLY LEU LEU VAL ARG 
ASP LEU ASN GLY ASN GLY ILE ILE ASP ASN 
GLY ALA GLU LEU PHE GLY ASP ASN THR LYS 
LEU ALA ASP GLY SER PHE ALA LYS HIS GLY 
TYR ALA ALA LEU ALA GLU LEU ASP SER ASN 
GLY ASP ASN ILE ILE ASN ALA ALA ASP ALA 
ALA PHE GLN SER LEU ARG VAL TRP GLN ASP 
LEU ASN GLN ASP GLY ILE SER GLN ALA ASN 
GLU LEU ARG THR LEU GLU GLU LEU GLY ILE 
GLN SER LEU ASP LEU ALA TYR LYS ASP VAL 
ASN LYS ASN LEU GLY ASN GLY ASN THR LEU 
ALA GLN GLN GLY SER TYR THR LYS THR ASN 
GLY THR THR ALA LYS MET GLY ASP LEU LEU 
LEU ALA ALA ASP ASN LEU HIS SER ARG PHE 
LEU GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
