segName='   B'
seq="""
PRO SER PHE ASN THR VAL ARG GLN GLY SER 
LYS GLU PRO TYR PRO ASP PHE VAL ALA ARG 
LEU GLN ASP VAL ALA GLN LYS SER ILE ALA 
ASP GLU LYS ALA ARG LYS VAL ILE VAL GLU 
LEU MET ALA TYR GLU ASN ALA ASN PRO GLU 
CYS GLN SER ALA ILE LYS PRO LEU LYS GLY 
LYS VAL PRO ALA GLY SER ASP VAL ILE SER 
GLU TYR VAL LYS ALA CYS ASP GLY ILE GLY 
GLY ALA MET HIS LYS ALA MET LEU MET ALA 
GLN LEU GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
